RNA id: TU472300


Basic Information

Item Value
RNA id TU472300
length 376
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G416673
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54980433 ~ 54981243 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gattgtttagGTAACGCCAGTTAATTTGAGCAGGAAAGTTCATGTAGTCTAACATTATAGTAtgtttccattatgtggaacAATGTCAGGTCATTAAAGTTGATTGCTGGTTGAGTAGTTTGAGAGCCTGTTGGCAAAAGACTGAATGGGTATGAATGTTGAAAAGCAAGCTTGGGCCAAACTAGTAAactagtatgttaagtgggggagtatcatagattttaaTTATAGTGTTGTTACCGCAATAGTCAAAACAATTTCATATGTTttgggaaattagctaggttgaatttggttatttgagttCCTTTTTTATTTGCTTTTTAAAAgaaaggttggaatcaagtatgatgccttggtacttaaaatcagatac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472161 lncRNA downstream 16730 54963490 ~ 54963703 (-) True G416545
TU472160 lncRNA downstream 17142 54963054 ~ 54963291 (-) True G416544
TU472139 lncRNA downstream 27995 54951507 ~ 54952438 (-) True G416530
TU472130 lncRNA downstream 42191 54937276 ~ 54938242 (-) True G416521
TU472082 lncRNA downstream 91919 54887546 ~ 54888514 (-) False G416481
TU472323 lncRNA upstream 37112 55018355 ~ 55018559 (-) True G416696
TU472336 lncRNA upstream 61588 55042831 ~ 55043076 (-) True G416709
TU472339 lncRNA upstream 64746 55045989 ~ 55067110 (-) True G416712
TU472303 lncRNA upstream 90862 55072105 ~ 55073852 (-) True LOC110524069
TU472361 lncRNA upstream 113700 55094943 ~ 55097297 (-) True G416733
XM_036977860.1 mRNA downstream 55681 54899096 ~ 54924752 (-) True LOC110524065
XM_021603376.2 mRNA downstream 55682 54899096 ~ 54924751 (-) False LOC110524065
XM_036977856.1 mRNA downstream 210147 54717326 ~ 54770286 (-) False slc44a5b
XR_005051585.1 mRNA upstream 16443 54997686 ~ 55005447 (-) True LOC118964528
XM_021603380.2 mRNA upstream 70481 55051724 ~ 55071938 (-) True LOC110524068
XM_021603381.2 mRNA upstream 90842 55072085 ~ 55073951 (-) False LOC110524069
XM_036977864.1 mRNA upstream 121716 55102959 ~ 55122187 (-) False si:ch211-221n20.8
XM_036977866.1 mRNA upstream 121716 55102959 ~ 55122188 (-) False si:ch211-221n20.8
TU471641 other downstream 594205 54363286 ~ 54386228 (-) False G416110
TU470869 other downstream 974760 54003731 ~ 54005673 (-) True G415464
TU470822 other downstream 1087527 53890760 ~ 53892906 (-) True G415420
TU470639 other downstream 1361569 53617738 ~ 53618864 (-) True G415256
TU470637 other downstream 1361674 53617683 ~ 53618759 (-) False G415256
TU472396 other upstream 160072 55141315 ~ 55160267 (-) True LOC110524071
TU473281 other upstream 627592 55608835 ~ 55609730 (-) True G417527
TU474559 other upstream 1727555 56708798 ~ 56709840 (-) False LOC110522975
TU474560 other upstream 1729037 56710280 ~ 56711384 (-) True LOC110522975
TU474707 other upstream 1852783 56834026 ~ 56834595 (-) True G418830

Expression Profile