RNA id: TU472480


Basic Information

Item Value
RNA id TU472480
length 2406
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G416823
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 55268452 ~ 55271810 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGAAATGATTGTGCTCCCCTTGTATTTAATAAAACATCATCAAACAATTAGTCAGAAATCACGAAATGCATCAGTGTATGACCACAGTCAGTAGGCTTAACACATTTCAAAAGATGAGACTTGCATTTGTGATCATAGACAATATATTTTTCTATAGATATACTGTGTAGCCACACGTCATTACAGCAGAGTTTGTCACACATCGATATATAGGAAGGGTGGATTGTTTCTTTGGATTTGAAAATGCGTTTCCATCGATCAATGACGTGAAGAAAGACGTTTTCTGTGGCGCTTCGGACGAGCGCTGAGTTCAATGGCAATATAGACGGAACTATTGGGCGTGACGGAATCATCATTAGTCCAACGAacacgtgcacaaacacacagcctATTGCCGACTGACACGCATAGGACAAAGTCAGACAAAATCTAAAAGTCTAGAGTAGATGGAGAGATCACAGcatgagagagaggaaaataaataGGTAGCAGTGAGTTTAAAATGAATCTCTTTAAAGGGATCGGGCATTAAGACTTATAGAAATAGTCTCTCACAGAAATAAGACTGATGtatgatgaacacacacacacataacaatcTACTCTGGCACATCAGCGACTCACGGCAGAGCAGGAGTCAGTCCCCTTAATAGGCCGACATCCCCTAAATCCTAGGACCCCTAACAAGTATTTAGGACGCACACCAGATTGCACTTTTACTGAGACAGGCACGACGCGAGAGTTAATATGCAGGGTTTTCCTTAGTGTTAACCGGGGTCATATTCATTATGGCACAACGTAGCTAAATGGTTTGCAAGTGTTTTTGTATTGGGCAaattcaggtagtccctccttTTTTCAGTCTGCTTTCTCCCGTTTGGGACCTAATGAATacaactgtggggggggggggggggggggggttcagatcATTTGGCAACACTGTGTACTAATAACCGGTCTCACATCTGCATACGCAAGGCAAAACTCCTTCGCGACACGCACAAAAGCTTACTGCTCTTAGCAGGACTACACAACATACTGCAGAGTGATAAACCAGACAGTAGTTGTTGGCCTTGATAACTGTGTTTGAATGGCTCCAGAGGGTGCTGTGTCATGCTATGAAGTGTTATAGAAGTACACGGCAGGTTACCAGTTATTTCAGCATAAACGCAATTGATTCATTTCGTTGACCACACTTATAGACTAGAGCAGGGTTATTCAACTCTGAGCCtacgaggtctggagcctgctgcttttctgttctacctgatcattacaTTTCACCCAcctcccaggtctaaatcagacccctGATTAGAGGGCAACAATGCAAGAAAACACAGTGGAACTagcttcaaggtccagagttgtGTTTGAGGGGACTAGACTGTTGAATGTACTACCTTTGCGTAAGAGTATGACACCACGAGTTTAAATCGTGTGCGGGCAATGAGGAATGAGAAGATGTGCGTCAACCTGACAGTGACTCACTAGCCtactgtgtgtgggtgtttatATACAGAATGTGTGTGTCTAAATGACCTGTTCCAGTCTAGTGTGTCGCAGCCCCGTTCCCTGCCGAGACCATTCGCCCTCACAGTTTGCACATTAGCAGCAAATTAAGCTGACATCTCTAACAGCTATCCAGTGTCTCCCGATCAGGGAGATGCTAAGCTAACGCTAGGCTAACGTTGAAGAGACCTCAACCAACTGAACCTCTCATATTGTTCTACCAGTGTTCTATGTAGGAAGCACGGGTGCGATCACACAAATAAAAGCTGAATGGCACAGACTGTAAAGCTTCCCTGTGATTCCTTGCTGTATAATATCCAATCATTTGCCATATTAAGAAGTGGTGTGTATCCAGTCAGCACAGCGATTGGAGCACCCTCAAAGTGAGGCTCCTAAGATGGCACACAGGAAGTTAGGTGTCACTACTTCCTGCAGCCCCCCAGATTACAGTCCTCTTATTTCTCATGGTTCACTTGAGGGCACAGCTGAACGAGGTGTGGCACACATGTTCTCTACATCTCTACAGGGCAGGGCTCTCCTTGGCAGTGCCATCTAGTGAGCGAATCCTTCCAGAACCAATGCCCCCTTTCTCGTTAATGGGCTGTTTATAAGGGTGAAGATGGGCATCAGATGTTGGCCAACTCAACGGAACAGAgtcttgttttttgttttttgcacGTTGGAAAGTTGAAACCAGTTCAACCCCATAATGGTCGCTTTGCCAGTGGgggtataagtgtgtgtgtgagctaggAGAGGACTTCCAGAGTGACGGCCCCCTTCTGTCTCTTCAGTATGGCCACGGCCAGTTCGTGGGTGGCCCCCTCCAGACTCTCTCCGTTTACTGACAGAATCTGGTCACCCCTCTTCAGACGCCCGTCCACCGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472484 lncRNA upstream 8997 55257695 ~ 55259455 (+) True LOC110524076
TU472500 lncRNA upstream 13351 55242498 ~ 55255101 (+) True LOC110524074
TU472478 lncRNA upstream 49740 55217754 ~ 55218712 (+) True G416821
TU472445 lncRNA upstream 85826 55180492 ~ 55182626 (+) True G416791
TU472429 lncRNA upstream 89256 55178937 ~ 55179196 (+) True G416790
TU472521 lncRNA downstream 2881 55274691 ~ 55317707 (+) False G416859
TU472522 lncRNA downstream 2881 55274691 ~ 55297316 (+) False G416859
TU472523 lncRNA downstream 2881 55274691 ~ 55277041 (+) True G416859
TU472517 lncRNA downstream 15865 55287675 ~ 55318979 (+) False G416856
TU472516 lncRNA downstream 21965 55293775 ~ 55300846 (+) False G416856
XM_036977879.1 mRNA upstream 92 55257674 ~ 55268360 (+) False LOC110524076
XM_021603389.2 mRNA upstream 92 55258519 ~ 55268360 (+) False LOC110524076
XM_021603388.2 mRNA upstream 13339 55249877 ~ 55255113 (+) False LOC110524074
XM_021603387.2 mRNA upstream 28791 55237867 ~ 55239661 (+) True LOC110524073
XM_036977863.1 mRNA upstream 171195 55082899 ~ 55097257 (+) True LOC118964621
XM_021603391.2 mRNA downstream 216010 55487820 ~ 55499695 (+) False LOC110524077
XM_021603392.2 mRNA downstream 216010 55487820 ~ 55499695 (+) False LOC110524077
XM_021603394.2 mRNA downstream 216010 55487820 ~ 55499695 (+) False LOC110524077
XR_005051763.1 mRNA downstream 216010 55487820 ~ 55499695 (+) False LOC110524077
XM_021603393.2 mRNA downstream 216010 55487820 ~ 55504741 (+) False LOC110524077
TU471439 other upstream 655310 54590074 ~ 54613142 (+) False G415946
TU471449 other upstream 655310 54590074 ~ 54613142 (+) False G415946
TU471274 other upstream 917837 54346536 ~ 54350615 (+) False mutyh
TU471261 other upstream 937972 54330080 ~ 54330480 (+) True G415809
TU471260 other upstream 938672 54329195 ~ 54329780 (+) True G415808
TU472519 other downstream 52835 55324645 ~ 55325271 (+) True G416857
TU473866 other downstream 1346080 56617890 ~ 56628617 (+) True G418077
TU473915 other downstream 1454375 56726185 ~ 56729821 (+) True G418119
TU474058 other downstream 1652114 56923924 ~ 56925176 (+) True G418251
TU474030 other downstream 1672028 56943838 ~ 56958165 (+) True LOC100135807

Expression Profile