RNA id: TU472521


Basic Information

Item Value
RNA id TU472521
length 2392
lncRNA type antisense_over
GC content 0.50
exon number 5
gene id G416859
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 55274691 ~ 55317707 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTGGCtcccctgtctgtgtgtctgggctGTTGGGAAGGCTGGTGCTAGTGGACATACTCTCCACCTGACTGGCTATGGCACTGATGTTGGTGTCAGCGAtcacctgcaaacacacacaaattagTATGCACAAATGACATTAGAATTCACAGGGTATAATctgtgtgagcttgtgtgtgggtgtgggcgTTATAGACGAGGATGAGTCACAGGGTACATGTGATGTGGGTTTCAAATggaattcatttttattttttatgtactACAGATATGGCTCCTGGTTCAAAGTCTTGGTTCAATGTCAGAGAGAGCCACACAAAGCATAATGTGGTTATCATTGATCATtttcccctttccccctctctctctcactcactctctccaacTTTGGCAAGGAAAACAGCTTCGTTAGGTTTTAGTCCTCTCGTTTAACAAAATAGTCAGCCAGCCAACTACGGCGGTCAGCATCCGTTCATTTCCATATTTAAATCAAGCGGGAGGCAATTAAAAAtatgaaaaacaacaaacaaaggcTAATTAACAGACGACTTGTTGGCTGTGCGAAGGAACATTAGTGGAACGCTCCCCAGCCGTCGCCTGCACTAATCTTACTGATACCTTCtttctggagaaagagagaaggagacagagagagaaaggggaaggagtgagagcaggagagagaaaggggaaggagtgaaaaagggagcgggagagagagaaaggagtgagaaagagagcgggagagagagtgagaaaggggaaggagtgagagagcaggagagagagagaaaggggaaggagtgaaaaagggagcgggagagagagagagaaaggagtgagaaagagagcgggagagagagaaaggggaaggagtgaaaaagagcgggagagagagagagagagaaaggggaaggagtgaaaaagagcgggagagagagaaaggggaaggagtgagaaagggagcgggagagagagagaaaggggaaggagtgagaaagagagcgggagagagagagagaaaggggaaggagtgagaaagagagcgggagagagagagagaaaggggaaggagtgagaaagagagcaggagagagaaaggggaaggagtgagaaagagagcgggagagagagagagaggaaggagtgaaaaagagagcgggagagagagaggaaggagtgaaaaagagagcaggagagagagagagaggaaggagtgaaaaagagagcgggagagagagagagggagtgaaaaagagagcgggagagagagagagaaaggggaaggagtgagaaagagagcgggagagagagagagaaaggggaaggagtgagaaagagagcaggagagagaaaggggaaggagtgagaaagagagcgggagagagagagagaggaaggagtgaaaaagagagcgggagagagagagagaggaaggagtgaaaaagagagcaggagagagagagagaggaaggagtgaaaaagagagcgggagagagagagagggagtgaaaaagagagcgggagagagagagagagaggaaggagtgaaaaagagagcgagagagagagagagaggaaggagtgaaaaagagagcgggagagagagagaggaaggagtgaaaaagagagagagaaaggggaaggagtgaaaaagagcgggagagagagaaaggagtgaaaaaagcaggagagcgggagagagagagaaaggagtgagagcgggagagagagagagagagaaaggagtgagaaagagagcgggagagagagagagaaaggagtgagaaagagagcggcagagagagagagaaaggggaaggagtgagaaagagagcgggagagagagagcgagaaaggggaaggagtgagaaagagagcgggagagagagagagagaaaggggaaggagtgagaaagagagcgggagagagagagagagaaaggagtgaaaaagagagcgggagagagagagagagaggaaggagtgaaacagagagcgggagagagagagaggaaggagtgaaaaagagagagagaaaggggaaggagtgaaaaagagcgggagagagagaaaggagtgaaaaaaagcaggagagcgggagagagagagaaaggagtgagagcgggagagagagagagagaaaggagtgagaaagagagcggcagagagagagagaaaggggaaggagtgagaacgagagcgggagagagagagaaaggagtgagagagcgggagagagagagagaaaggagtgagaaagagagcgagagagagagaaaggggaaggagtgagagcgggagagagagagagagagaaaggagtgagaaagagagcgggagagagagagagaaaggggaaggagtgagaaagagagcgggagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472480 lncRNA upstream 2881 55268452 ~ 55271810 (+) True G416823
TU472484 lncRNA upstream 15236 55257695 ~ 55259455 (+) True LOC110524076
TU472500 lncRNA upstream 19590 55242498 ~ 55255101 (+) True LOC110524074
TU472478 lncRNA upstream 55979 55217754 ~ 55218712 (+) True G416821
TU472445 lncRNA upstream 92065 55180492 ~ 55182626 (+) True G416791
TU472562 lncRNA downstream 39682 55357389 ~ 55359150 (+) False G416893
TU472559 lncRNA downstream 42008 55359715 ~ 55361834 (+) True G416893
TU472625 lncRNA downstream 99424 55417131 ~ 55417724 (+) True G416945
TU472611 lncRNA downstream 110504 55428211 ~ 55452917 (+) True G416941
TU472614 lncRNA downstream 115724 55433431 ~ 55443491 (+) False G416944
XM_036977879.1 mRNA upstream 6331 55257674 ~ 55268360 (+) False LOC110524076
XM_021603389.2 mRNA upstream 6331 55258519 ~ 55268360 (+) False LOC110524076
XM_021603388.2 mRNA upstream 19578 55249877 ~ 55255113 (+) False LOC110524074
XM_021603387.2 mRNA upstream 35030 55237867 ~ 55239661 (+) True LOC110524073
XM_036977863.1 mRNA upstream 177434 55082899 ~ 55097257 (+) True LOC118964621
XM_021603391.2 mRNA downstream 170113 55487820 ~ 55499695 (+) False LOC110524077
XM_021603392.2 mRNA downstream 170113 55487820 ~ 55499695 (+) False LOC110524077
XM_021603394.2 mRNA downstream 170113 55487820 ~ 55499695 (+) False LOC110524077
XR_005051763.1 mRNA downstream 170113 55487820 ~ 55499695 (+) False LOC110524077
XM_021603393.2 mRNA downstream 170113 55487820 ~ 55504741 (+) False LOC110524077
TU471439 other upstream 661549 54590074 ~ 54613142 (+) False G415946
TU471449 other upstream 661549 54590074 ~ 54613142 (+) False G415946
TU471274 other upstream 924076 54346536 ~ 54350615 (+) False mutyh
TU471261 other upstream 944211 54330080 ~ 54330480 (+) True G415809
TU471260 other upstream 944911 54329195 ~ 54329780 (+) True G415808
TU472519 other downstream 6938 55324645 ~ 55325271 (+) True G416857
TU473866 other downstream 1300183 56617890 ~ 56628617 (+) True G418077
TU473915 other downstream 1408478 56726185 ~ 56729821 (+) True G418119
TU474058 other downstream 1606217 56923924 ~ 56925176 (+) True G418251
TU474030 other downstream 1626131 56943838 ~ 56958165 (+) True LOC100135807

Expression Profile