RNA id: TU473762



Basic Information


Item Value
RNA id TU473762
length 263
lncRNA type antisense_over
GC content 0.32
exon number 2
gene id G417991
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 56460784 ~ 56465861 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTGAAAATATTTATTGAAGGCACAATTAAGAAAAGTTTAAGCTACACAGAACACTAATGACCAAAAGGGacccatttttttgtttgttttctaaCTATTTAATTGTGATGTTTGTTTTCTTTACTGAGAGGCCCAAGAGAAAAGGTCCCAAGCTAATTGTAATCAAAGTATACATGTTTCATAGATCTGAAACGATAGGTTTTATAATACCTACTTTgtgctacaaaaaaaaaaaaaaaaaaaaaaaccccTTTTCCcccccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU473752 lncRNA upstream 24803 56435617 ~ 56435981 (+) True G417983
TU473746 lncRNA upstream 33254 56427300 ~ 56427530 (+) True G417977
TU473738 lncRNA upstream 49174 56411403 ~ 56411610 (+) True G417969
TU473737 lncRNA upstream 50383 56410170 ~ 56410401 (+) True G417968
TU473652 lncRNA upstream 216993 56226865 ~ 56243791 (+) True G417883
TU473760 lncRNA downstream 5184 56471045 ~ 56473135 (+) True G417989
TU473780 lncRNA downstream 11902 56477763 ~ 56478566 (+) False G418007
TU473781 lncRNA downstream 12256 56478117 ~ 56478566 (+) True G418007
TU473847 lncRNA downstream 128117 56593978 ~ 56594366 (+) True G418063
TU473861 lncRNA downstream 148345 56614206 ~ 56616854 (+) True G418076
XM_036977902.1 mRNA upstream 355503 55932977 ~ 56105281 (+) False LOC110524085
XM_021603418.2 mRNA downstream 39683 56505544 ~ 56525588 (+) False LOC110524091
XM_021603420.2 mRNA downstream 39683 56505544 ~ 56525588 (+) False LOC110524091
XM_021603419.2 mRNA downstream 39904 56505765 ~ 56525588 (+) False LOC110524091
XM_021603421.2 mRNA downstream 39904 56505765 ~ 56525588 (+) False LOC110524091
XM_036977911.1 mRNA downstream 40719 56506580 ~ 56525588 (+) False LOC110524091
TU472519 other upstream 1135513 55324645 ~ 55325271 (+) True G416857
TU471439 other upstream 1847642 54590074 ~ 54613142 (+) False G415946
TU471449 other upstream 1847642 54590074 ~ 54613142 (+) False G415946
TU471274 other upstream 2110169 54346536 ~ 54350615 (+) False mutyh
TU471261 other upstream 2130304 54330080 ~ 54330480 (+) True G415809
TU473866 other downstream 152029 56617890 ~ 56628617 (+) True G418077
TU473915 other downstream 260324 56726185 ~ 56729821 (+) True G418119
TU474058 other downstream 458063 56923924 ~ 56925176 (+) True G418251
TU474030 other downstream 477977 56943838 ~ 56958165 (+) True LOC100135807
TU475029 other downstream 899503 57365364 ~ 57367337 (+) True LOC110524119

Expression Profile