RNA id: TU473760



Basic Information


Item Value
RNA id TU473760
length 472
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G417989
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 56471045 ~ 56473135 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAAAGTGAATTTAAGGTCCACGTGTTCTTGACCAATTTGGCTTAAGTTGATGATCAGACTCAAAACCATAACTATAGACCATTTTCAGAGAAAGAAAATAGTTTGACAAATAGTCAAATCAGTATCCCTTTAAAGAAAGCTGTGGACAGAAACCCCATGAAAATGCTGCAACTTTTTGCCAAGTGTCTCAAATCAACACGCAAAATATTTgaaaacaaaaaaactgaaacaaaTTAGTTAAGAAAAAGAAAACAGAACAAACAAGTAGTAATAATAAAAAAGGTGCTAATGATAACATACCGAAAAGAATAAAGAGGCATTGGGGTGTAACTCTCTCTGGGTTGAGGTTGCTGACCAGCATGACACAGTGGCCACCGGAGAGTTGGTGGAAGCCCATTCTGCCTGCAGCCGCCGCGGCTGCAGCCACAGGCATGGTCAGTTGAGCCAGGCCTCCAGGGACACTGTGCATCGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU473762 lncRNA upstream 5184 56460784 ~ 56465861 (+) True G417991
TU473752 lncRNA upstream 35064 56435617 ~ 56435981 (+) True G417983
TU473746 lncRNA upstream 43515 56427300 ~ 56427530 (+) True G417977
TU473738 lncRNA upstream 59435 56411403 ~ 56411610 (+) True G417969
TU473737 lncRNA upstream 60644 56410170 ~ 56410401 (+) True G417968
TU473780 lncRNA downstream 4628 56477763 ~ 56478566 (+) False G418007
TU473781 lncRNA downstream 4982 56478117 ~ 56478566 (+) True G418007
TU473847 lncRNA downstream 120843 56593978 ~ 56594366 (+) True G418063
TU473861 lncRNA downstream 141071 56614206 ~ 56616854 (+) True G418076
TU473878 lncRNA downstream 160718 56633853 ~ 56667606 (+) True G418087
XM_036977902.1 mRNA upstream 365764 55932977 ~ 56105281 (+) False LOC110524085
XM_021603418.2 mRNA downstream 32409 56505544 ~ 56525588 (+) False LOC110524091
XM_021603420.2 mRNA downstream 32409 56505544 ~ 56525588 (+) False LOC110524091
XM_021603419.2 mRNA downstream 32630 56505765 ~ 56525588 (+) False LOC110524091
XM_021603421.2 mRNA downstream 32630 56505765 ~ 56525588 (+) False LOC110524091
XM_036977911.1 mRNA downstream 33445 56506580 ~ 56525588 (+) False LOC110524091
TU472519 other upstream 1145774 55324645 ~ 55325271 (+) True G416857
TU471439 other upstream 1857903 54590074 ~ 54613142 (+) False G415946
TU471449 other upstream 1857903 54590074 ~ 54613142 (+) False G415946
TU471274 other upstream 2120430 54346536 ~ 54350615 (+) False mutyh
TU471261 other upstream 2140565 54330080 ~ 54330480 (+) True G415809
TU473866 other downstream 144755 56617890 ~ 56628617 (+) True G418077
TU473915 other downstream 253050 56726185 ~ 56729821 (+) True G418119
TU474058 other downstream 450789 56923924 ~ 56925176 (+) True G418251
TU474030 other downstream 470703 56943838 ~ 56958165 (+) True LOC100135807
TU475029 other downstream 892229 57365364 ~ 57367337 (+) True LOC110524119

Expression Profile