RNA id: TU473861


Basic Information

Item Value
RNA id TU473861
length 1667
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G418076
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 56614206 ~ 56616854 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagagagagagagagagagcctgacaTAGCAAACCAATTCCCCAATAGGTGGCCCGTGGGCCAAATTCTGCTCGTGGTTAAATTTATGTGCACCCCCTCATTTTCCTTTTagaatttattttatataatttGCTTTGTTGGACATGAGACTGTAAAATCACCAGCAAATCAGCtgtaagtgattttaatttaggaaatctgttacCAATCTGTTCCCACGCATAAATAGATGTACTCAAGGCTTGAAATGattctgtttttgtcaaataccatatatatgtttgggcttcttgcagtcaatttgcagtgtacaaatgatttataactacagtaccagtcaaaagtttggacacgccatctcattcaagggatttctttattttttttactattttctacattgtataataatagtgaggacatcaaaactatgaaataacacatatggaatcatctattattctaaaatgtagaaaatagtccaaataaagaggtgtgtccaaacttttgactggtactgtatgttccgGCTCCCCGACCATCTgcttaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaaatcagcTCCCAGCTGAATCCGCCCGCGCCTGCCCTAAaccatcattattattattaaacacTTAATTAAAAAGCCTTGAAATTAGAGCAATATAAAAGTGTCTATTTACATATTGACGTTTACTACTATTTTAACTGTATCACCACCATAATTACTACTATAGTTTTCCCGAAAACTACTATTTGAGATATAGGCCAATGCTCTACGTTAGCTAATGACATACACATGCTCTATAGCTACTTTTGCTAGAACTACTTACCCAGCTGTACATGGAAACGGCAACTACATATCGTATAGTTATTGTGTAGTTACTAGTTAGATAAATGTAAATATTACATACATAGTACTACATAATGTAGCATCTGTGTAACTAAAGTGTGACCCATAATAGATATGTGACATATCGGCATTTAAAAATGAATAGAGGGCACTGCAAATAGATTTAAAGAAGTAAATCCAATATGTGTCATATCACTACCACCTGTCGCAGCTTGCTACGCTGAACACGGTCAGTAGACAGACCGCGAGAGAGCCGCAGCACACTTTAACCGGCCAAAGACAGCCGTCCGGTTGCTCCGGCACAAAAGCCCACAGAGATTCACAGGCCCTGCTGGtaaacagacacgcacacacaccgacGACCCCCAAacccacacacataaacacacccacTTGCGGAGCAGCAGACTTACGGGTTGTCCCTCTGGACGGGTAGGATGGTGTGGTCGGCCTTGAGTGGGAAGGAACGGGCCTTCATACGGGCTCTCTCCAGGAGCCGCTTGGCCTGCTCATGGCGCGGACTCAGCGGCAGGTCCTCGCTGGACACAAAGGCCCTCTCGCTGTCTTGGAGGGAGATTCCTGAATCCCAGTCACTGTCATTCAGCGCAATGGAACCTATAGGGACATAAATAGACACTGTAACCAGGCAGACATAAGTATAATTTCCCTCCAGTATTGAAATGGCGTTGATTTCCTTATTTCTCTGGAAACTACAATAACAAATCATGAGCAAGAAATATGGAAGAACCGTATTAAGTTGAACTATTTGTTTACTTTCCCTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU473847 lncRNA upstream 19840 56593978 ~ 56594366 (+) True G418063
TU473780 lncRNA upstream 135640 56477763 ~ 56478566 (+) False G418007
TU473781 lncRNA upstream 135640 56478117 ~ 56478566 (+) True G418007
TU473760 lncRNA upstream 141071 56471045 ~ 56473135 (+) True G417989
TU473762 lncRNA upstream 148345 56460784 ~ 56465861 (+) True G417991
TU473878 lncRNA downstream 16999 56633853 ~ 56667606 (+) True G418087
TU473972 lncRNA downstream 209285 56826139 ~ 56826512 (+) True G418176
TU473974 lncRNA downstream 210817 56827671 ~ 56827880 (+) True G418178
TU473977 lncRNA downstream 212868 56829722 ~ 56829961 (+) True G418181
TU473979 lncRNA downstream 216522 56833376 ~ 56833580 (+) True G418183
XM_021603427.2 mRNA upstream 20925 56585208 ~ 56593281 (+) False LOC110524094
XM_021603426.2 mRNA upstream 20925 56585697 ~ 56593281 (+) True LOC110524094
XM_036977913.1 mRNA upstream 88618 56514318 ~ 56525588 (+) False LOC110524091
XM_021603431.2 mRNA downstream 14942 56631796 ~ 56647090 (+) False stil
XM_021603432.2 mRNA downstream 14942 56631796 ~ 56647090 (+) False stil
XM_021603433.2 mRNA downstream 14942 56631796 ~ 56647090 (+) False stil
XM_021603434.2 mRNA downstream 14942 56631796 ~ 56647090 (+) True stil
XM_036977915.1 mRNA downstream 42067 56658921 ~ 56681288 (+) False rc3h1a
TU472519 other upstream 1288935 55324645 ~ 55325271 (+) True G416857
TU471439 other upstream 2001064 54590074 ~ 54613142 (+) False G415946
TU471449 other upstream 2001064 54590074 ~ 54613142 (+) False G415946
TU471274 other upstream 2263591 54346536 ~ 54350615 (+) False mutyh
TU471261 other upstream 2283726 54330080 ~ 54330480 (+) True G415809
TU473866 other downstream 1036 56617890 ~ 56628617 (+) True G418077
TU473915 other downstream 109331 56726185 ~ 56729821 (+) True G418119
TU474058 other downstream 307070 56923924 ~ 56925176 (+) True G418251
TU474030 other downstream 326984 56943838 ~ 56958165 (+) True LOC100135807
TU475029 other downstream 748510 57365364 ~ 57367337 (+) True LOC110524119

Expression Profile