RNA id: TU473974


Basic Information

Item Value
RNA id TU473974
length 210
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G418178
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 56827671 ~ 56827880 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCTGTCTTGGCCATTCTATCTGTTTCTCAATTCTCTCCTGTCTACTTTCCCGATGTCCTGTCTGacaaaatgaatacaaatatgAAAGGAGGTCAGAAAACCAGATCCCCTTTACAAAGAAGGGGGGGAAGATAGTTAAAAGCCGGTGTTTTGTTTTAATCAACAGAACATAATACACGGGGGAAAATGTGCTGGCACTACAGATATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU473972 lncRNA upstream 1159 56826139 ~ 56826512 (+) True G418176
TU473878 lncRNA upstream 160065 56633853 ~ 56667606 (+) True G418087
TU473861 lncRNA upstream 210817 56614206 ~ 56616854 (+) True G418076
TU473847 lncRNA upstream 233305 56593978 ~ 56594366 (+) True G418063
TU473780 lncRNA upstream 349105 56477763 ~ 56478566 (+) False G418007
TU473977 lncRNA downstream 1842 56829722 ~ 56829961 (+) True G418181
TU473979 lncRNA downstream 5496 56833376 ~ 56833580 (+) True G418183
TU473980 lncRNA downstream 5757 56833637 ~ 56833862 (+) True G418184
TU473983 lncRNA downstream 7887 56835767 ~ 56836057 (+) True G418187
TU473984 lncRNA downstream 8373 56836253 ~ 56836611 (+) True G418188
XM_021603443.2 mRNA upstream 39018 56779858 ~ 56788653 (+) True dph5
XM_021603437.2 mRNA upstream 125515 56696618 ~ 56702156 (+) False serpinc1
XM_021603438.2 mRNA upstream 125515 56696637 ~ 56702156 (+) True serpinc1
XM_021603435.2 mRNA upstream 139082 56658922 ~ 56688589 (+) True rc3h1a
XM_036977915.1 mRNA upstream 146383 56658921 ~ 56681288 (+) False rc3h1a
NM_001124203.1 mRNA downstream 115963 56943843 ~ 56956322 (+) False LOC100135807
XR_005051970.1 mRNA downstream 127444 56955324 ~ 56955462 (+) True LOC118964777
XM_021603458.2 mRNA downstream 188048 57015928 ~ 57037694 (+) True LOC110524109
XR_005051954.1 mRNA downstream 198445 57026325 ~ 57026460 (+) True LOC118964761
XM_036979052.1 mRNA downstream 211237 57039117 ~ 57061390 (+) True nwd1
TU473915 other upstream 97850 56726185 ~ 56729821 (+) True G418119
TU473866 other upstream 199054 56617890 ~ 56628617 (+) True G418077
TU472519 other upstream 1502400 55324645 ~ 55325271 (+) True G416857
TU471439 other upstream 2214529 54590074 ~ 54613142 (+) False G415946
TU474058 other downstream 96044 56923924 ~ 56925176 (+) True G418251
TU474030 other downstream 115958 56943838 ~ 56958165 (+) True LOC100135807
TU475029 other downstream 537484 57365364 ~ 57367337 (+) True LOC110524119
TU475377 other downstream 1056500 57884380 ~ 57899648 (+) True G419452
TU476101 other downstream 1585243 58413123 ~ 58416776 (+) False G420117

Expression Profile