RNA id: TU474712


Basic Information

Item Value
RNA id TU474712
length 533
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G418835
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 56857625 ~ 56858157 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTTTTACAGTGTTCGATTCATCAGCTGTGCGATATGAtataaaaatgtggaaaaactaaaTTTTGCCTACAATGGTCAGCTATGCTTGTAATAAGCAATGTATATAGGCTAATACTGAAAGTACATAAGTCTAATCCTAGTTATTTTactacacaaaagtatgtggacacccgttTGTCGAAaacctcattccaaaatcatgggcattaatatgaagttggtccccctttgctgctataacagtctccactcttctgggaaggctttccactagatgttggaacattgctgcagggacttgcttccgttcagccatgagcattggtgaggtcgggcactgatgttgggcgattaggccaatctcaacaaacaatttctgtatggacctcgctttctgcacgggggcattgtcatgctgaaacaggaaagggcctttctcaaactgttgccacaaagttggaatcacagaattgtctagaatgtcattttatgctgtagtgttaagatttccctgcACTGGAATTAaggagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU474549 lncRNA downstream 155463 56698200 ~ 56702162 (-) False G418689
TU474551 lncRNA downstream 155463 56698200 ~ 56702162 (-) True G418689
TU474619 lncRNA downstream 169053 56687084 ~ 56688572 (-) True G418749
TU474531 lncRNA downstream 226651 56618737 ~ 56630974 (-) True si:dkey-121a11.3
TU474530 lncRNA downstream 229081 56618737 ~ 56628544 (-) False si:dkey-121a11.3
TU474713 lncRNA upstream 101 56858258 ~ 56858492 (-) True G418836
TU474716 lncRNA upstream 392 56858549 ~ 56858751 (-) True G418839
TU474744 lncRNA upstream 57288 56915445 ~ 56915660 (-) True G418867
TU474749 lncRNA upstream 74145 56932302 ~ 56932694 (-) True G418872
TU474772 lncRNA upstream 95395 56953552 ~ 56953930 (-) True G418892
NM_001124517.1 mRNA downstream 15178 56838507 ~ 56842447 (-) True LOC100136253
XM_036977917.1 mRNA downstream 40560 56789633 ~ 56817065 (-) True LOC110524101
XM_021603442.2 mRNA downstream 40562 56789633 ~ 56817063 (-) False LOC110524101
XM_036977918.1 mRNA downstream 41317 56789633 ~ 56816308 (-) False LOC110524101
XM_021603441.2 mRNA downstream 127783 56726174 ~ 56729842 (-) True LOC110524100
XM_021603451.2 mRNA upstream 2458 56860615 ~ 56862316 (-) True gpr88
XM_021603445.2 mRNA upstream 6293 56864450 ~ 56913652 (-) False cdc14ab
XM_021603449.2 mRNA upstream 6293 56864450 ~ 56913652 (-) False cdc14ab
XM_036977919.1 mRNA upstream 6293 56864450 ~ 56913652 (-) False cdc14ab
XM_036977921.1 mRNA upstream 6293 56864450 ~ 56913652 (-) False cdc14ab
TU474707 other downstream 23030 56834026 ~ 56834595 (-) True G418830
TU474560 other downstream 146241 56710280 ~ 56711384 (-) True LOC110522975
TU474559 other downstream 147785 56708798 ~ 56709840 (-) False LOC110522975
TU473281 other downstream 1247895 55608835 ~ 55609730 (-) True G417527
TU472396 other downstream 1697358 55141315 ~ 55160267 (-) True LOC110524071
TU475541 other upstream 752902 57611059 ~ 57611567 (-) True G419603
TU475533 other upstream 761897 57620054 ~ 57626174 (-) True LOC110524128
TU475656 other upstream 841588 57699745 ~ 57705936 (-) True G419714
TU476193 other upstream 1254230 58112387 ~ 58114060 (-) True G420193
TU476443 other upstream 1554971 58413128 ~ 58414143 (-) True G420421

Expression Profile