RNA id: TU474012


Basic Information

Item Value
RNA id TU474012
length 3486
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id G418209
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 56864489 ~ 56868205 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACCTGCATTAactgtaaatgtaaaatatatacactgaacaaaaaatatacaaCGCAATATGTTAAGTATTGGTCCCATTTTCATGAGCTGAACCaaaaagataccagaaatgtgCTATTTGCACAAAAACGTATTTTGCTCAAGTTTTATGCACACATTTGTTTTCATCCCTCTTAGTGAGcaattctcctttgccaagataatccatccacctgacaggtggggcatatcaagaagctgatgaaacagcgttgtcattacacaggtgcaccttgtgctggggacacatTAAAATATGCCGTATCACtaactgatggacattcctctaccataagccacctccaacccCATTTTAGAGAATATGGCCATATATCcgaccgcagaccacgtgtaaccacgcccaggacctccacatccggcttcttcacctgcgggatcgtctaatgaaactgggtttgcacaaccaaagaattttgGCACAAACTGTCTCAGCGAAGCTTatctgcgtgcttgtcgtcctcaccagggtcttgacccgaCTGCAGTacagcgtcgtaaccgacttcagttggCAAATGGTGACCTTCAAtagccactggcatgctggagaagtgtgctcttcatggctgatggcagacagcgtgtatggaatcatgtgggtgagcggtttgctgatgtcaacattgtgagcAGAGTGCCACATGATGGTTGTgcgattatggtatgggcaggcataagctatggacaatgaacacaattacattttatcaatggcaatttgaatgcacagacatACTGTGACGAGATACCGAGGCCCATTGTTATGCCATTCattcgccgccatcacctcatgtttccgcatgataatgcatggccctaTGTCgctaggatctgtacacaattcccggaagctgaaaatgtcccagttcttccatggcctgcatactcaccagatatgtcacccattgagcacttTTGGGATGCACTGGATCGAtatgtacgacagcatgttccagttcctgccaatatccagcaacttcgcacagccaagtcattgaagaggagtggaacaacattacacaggccacaatcaacagcctgatcaactccatgcgaaggagatgtgtcgcactgcacgaggcaaatggtggtcacaccagatacggactgtttTTTCCCCTGGTCCACAGCACtacctattttttttaaagtacagtagctgtggccaacagatgcatatctgtatccccagtcatgtgaaatccatagattagggcctaatgcaattattttaattgactgatttccttaaataaactcagtaaaatcttttaaaatgttgcgtttatatttttgctctgtGTACATACAGTAGACACATTTGCATTTTAGTATGCTTACTGTATGAAAAATACTGATCTACAGTTATAACATTTTCTTTACATACTGCTTGAAAAAATATATGCATGTAAGAATTTTGCTATTAAAATTGTACATTTCATGGAGGTAGAACACCTGCATTAAGATTCTCCCATTTTGAAACAAAATAATGTCACTGCCAGGAATGTACAGAGGTCTAAAATAATAACAAAAATGATCAAATCAGTGATAAACAAATGCTTCTGTatccattttttttctctcccccaaATCAATTTCAATATTCAActacataaaataaaaaaataagaagcATCCAAATATATGGATCTATTGTTACAAGGTCCAACAGAAAATGTACTTAGTTGGGCCATCGTAGGCCATACTCATTGGTAGAACTCCAGCTTTGATAATGACCGCTGCATTGTGCACCCAATGACATCCAGCATTACATTCTAAAGaaagcattttttgggggggacagttgtgcttttcatttatttttatttttttaggaaCCTCTACCTGCAAAAGTTCTCTCCATCTACAAGCTGAACTAATTATAATACACACAAGCCAGGAAAAACAGTCTCTGACTAGTTTTTACATTCAACACAAACACGCCACACAACATGGAAATATTTCAGTAATAGCGATGAACTTCCACTGCGCCTTGAATTATAAAACAACAAACATAATTGGTTCTacagtagggtgtgtgtgtgtgtgtgcgcgtttaaAAATAGTCTGCCACAAAATCAAGTTTCGTAATCTACAGCGAGTCAATGAGTGTCGAATAACACTGAAAATCTGCTCTTCCTCTAGTAATGACCACGGTTTGAATCATCCTTTTGGTTCATCATgctaaacatacagtacatagtcacAAGGCCTACAAAACGCTGGTTGCAGGTATGACTTTAGTATTTATCCTATAGTTGTCCCATTGATATGCAAATCTCCTGTAGGCTTGCGACAGAGGAGAACATTATTTATTAGTTCCAATTGAAACCAGTCGATTGAATTGACTTaatcaaaaacaaaacatttttgttttagaATAGTGAAGAAACAGCATTAATTTCTTCCCTATTTGTAATTCTCTTCCATTCACATCTCTTCTCTAGAGCCCATCACCAGAGGACTGCAAACATGATCTCTAGACAACCCCCTACACACACGGTAACCACTCGCTCACATGGGCACATACGTACATATTCTCATAGTCTATGGTACGTACATGCTACTACATGCACACGCGGACATACACCCCCACCCACGCACAAAACACAATCGTAAATAGGAGAGCACTTTACCCTGAGCCTGGTCCTGTAAATACATTGTTGATAAGGAACACGGCTCGCAAAATACCGTAAGCCGTCTCTCACAATCTCACATATTTTCATCTAGATGTATTGTTAGTGAAGTAGTTACACTCAgagacaaaaatagaattgtcGTAAACCAAAACATGTTCTTTAAACCACTTCTAAATAAACATTTCTTTATCCAGGCAACAAAATTGTCATATTTCATGTATAAAAACATTgtctaaaattattattattatttttaactaTTCCCCCCCCCAGTACAAGTCATGTGTACACAGTATTAGCACATAAACATataaaagaaaacagagatatgtGATACAGGAAAGTCTATATGTCCGGATCTCAGCTTTAAAAGAAAGAGCACTCACAGTCACAGCCTGGCCAAACCTAATCATAGCTCGCCAGAAAAAAAGGGGGGAAAAAGCTGGGTAAACAAATCGCCCTTTGTAAGCATTATCCAAACAGTGACTGCAGTTAGGGTGGATCGAGGCCGTCTGAGGCTGACATAAGAAGCCCAAAACTCAAAGTTCCATGAGCACTTGGGAGTTTGTGGCTGTCAATGTGCCCGTCTCCAAAGACCACACCCATTCAGATGCCACGGTTTATTAATTTTTCTTTCAGTATgtaggagagagtgggggagatattgcgagagaaaaaaaagggggTGGGAGACCCATCCCATCCAGGTCAGAGGTCCAGTGTCAAGGTGTCTGTCCGGTCAACGCAGCACCACCGATTTAGTATTGAACATATTCAGATTGAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU474013 lncRNA upstream 265 56863974 ~ 56864224 (+) True G418210
TU473998 lncRNA upstream 11090 56853054 ~ 56853399 (+) True G418201
TU473990 lncRNA upstream 17287 56846087 ~ 56847202 (+) True G418193
TU473985 lncRNA upstream 19067 56841426 ~ 56845422 (+) True G418189
TU473986 lncRNA upstream 23706 56838520 ~ 56840783 (+) True G418190
TU474071 lncRNA downstream 73549 56941754 ~ 56941959 (+) True G418264
TU474072 lncRNA downstream 74220 56942425 ~ 56942665 (+) True G418265
TU474059 lncRNA downstream 95789 56963994 ~ 56965420 (+) True G418252
TU474104 lncRNA downstream 141981 57010186 ~ 57011064 (+) True G418297
TU474102 lncRNA downstream 145412 57013617 ~ 57015171 (+) True G418295
XM_021603443.2 mRNA upstream 75836 56779858 ~ 56788653 (+) True dph5
XM_021603437.2 mRNA upstream 162333 56696618 ~ 56702156 (+) False serpinc1
XM_021603438.2 mRNA upstream 162333 56696637 ~ 56702156 (+) True serpinc1
XM_021603435.2 mRNA upstream 175900 56658922 ~ 56688589 (+) True rc3h1a
XM_036977915.1 mRNA upstream 183201 56658921 ~ 56681288 (+) False rc3h1a
NM_001124203.1 mRNA downstream 75638 56943843 ~ 56956322 (+) False LOC100135807
XR_005051970.1 mRNA downstream 87119 56955324 ~ 56955462 (+) True LOC118964777
XM_021603458.2 mRNA downstream 147723 57015928 ~ 57037694 (+) True LOC110524109
XR_005051954.1 mRNA downstream 158120 57026325 ~ 57026460 (+) True LOC118964761
XM_036979052.1 mRNA downstream 170912 57039117 ~ 57061390 (+) True nwd1
TU473915 other upstream 134668 56726185 ~ 56729821 (+) True G418119
TU473866 other upstream 235872 56617890 ~ 56628617 (+) True G418077
TU472519 other upstream 1539218 55324645 ~ 55325271 (+) True G416857
TU471439 other upstream 2251347 54590074 ~ 54613142 (+) False G415946
TU474058 other downstream 55719 56923924 ~ 56925176 (+) True G418251
TU474030 other downstream 75633 56943838 ~ 56958165 (+) True LOC100135807
TU475029 other downstream 497159 57365364 ~ 57367337 (+) True LOC110524119
TU475377 other downstream 1016175 57884380 ~ 57899648 (+) True G419452
TU476101 other downstream 1544918 58413123 ~ 58416776 (+) False G420117

Expression Profile