RNA id: TU474071


Basic Information

Item Value
RNA id TU474071
length 206
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G418264
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 56941754 ~ 56941959 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCAacgtaattccgctacccaagactggtaaagtggcctttactggttctaacagcagacctataggCTTGCTGCTAGCTCTATgtccatgattttgtaatgagatgtttgacgagcaggtgtccacatacttttggtcatgtagtgcatgttgaATGAGAAACTAATCAGCATGGAGAGCCCCCTTTGGCGAAAACATTTAca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU474011 lncRNA upstream 73549 56864489 ~ 56868205 (+) False G418209
TU474012 lncRNA upstream 73549 56864489 ~ 56868205 (+) True G418209
TU474013 lncRNA upstream 77530 56863974 ~ 56864224 (+) True G418210
TU473998 lncRNA upstream 88355 56853054 ~ 56853399 (+) True G418201
TU473990 lncRNA upstream 94552 56846087 ~ 56847202 (+) True G418193
TU474072 lncRNA downstream 466 56942425 ~ 56942665 (+) True G418265
TU474059 lncRNA downstream 22035 56963994 ~ 56965420 (+) True G418252
TU474104 lncRNA downstream 68227 57010186 ~ 57011064 (+) True G418297
TU474102 lncRNA downstream 71658 57013617 ~ 57015171 (+) True G418295
TU474130 lncRNA downstream 97777 57039736 ~ 57039941 (+) True G418323
XM_021603443.2 mRNA upstream 153101 56779858 ~ 56788653 (+) True dph5
XM_021603437.2 mRNA upstream 239598 56696618 ~ 56702156 (+) False serpinc1
XM_021603438.2 mRNA upstream 239598 56696637 ~ 56702156 (+) True serpinc1
XM_021603435.2 mRNA upstream 253165 56658922 ~ 56688589 (+) True rc3h1a
XM_036977915.1 mRNA upstream 260466 56658921 ~ 56681288 (+) False rc3h1a
NM_001124203.1 mRNA downstream 1884 56943843 ~ 56956322 (+) False LOC100135807
XR_005051970.1 mRNA downstream 13365 56955324 ~ 56955462 (+) True LOC118964777
XM_021603458.2 mRNA downstream 73969 57015928 ~ 57037694 (+) True LOC110524109
XR_005051954.1 mRNA downstream 84366 57026325 ~ 57026460 (+) True LOC118964761
XM_036979052.1 mRNA downstream 97158 57039117 ~ 57061390 (+) True nwd1
TU474058 other upstream 16578 56923924 ~ 56925176 (+) True G418251
TU473915 other upstream 211933 56726185 ~ 56729821 (+) True G418119
TU473866 other upstream 313137 56617890 ~ 56628617 (+) True G418077
TU472519 other upstream 1616483 55324645 ~ 55325271 (+) True G416857
TU471439 other upstream 2328612 54590074 ~ 54613142 (+) False G415946
TU474030 other downstream 1879 56943838 ~ 56958165 (+) True LOC100135807
TU475029 other downstream 423405 57365364 ~ 57367337 (+) True LOC110524119
TU475377 other downstream 942421 57884380 ~ 57899648 (+) True G419452
TU476101 other downstream 1471164 58413123 ~ 58416776 (+) False G420117
TU476694 other downstream 2000769 58942728 ~ 58944217 (+) True G420634

Expression Profile