RNA id: TU474059


Basic Information

Item Value
RNA id TU474059
length 1357
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G418252
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 56963994 ~ 56965420 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTTATTGAAATGCATGGTTGTATACTTACTGTATATTTACAAGGTCAGTCAACAAATGTAATATTGAAAATAAAAGGCAGCAAAACAATGACAATACATGGAAAAGAAAAAAACTGCATACAGTATTTCAAGAAATTGCTGTTTTACAGAACACCAACTCATAAATAGCTAGAGCACACTTTCACAACTTTCATGATTCAATATGTACTTTTGGTATTTGGTCAATAAGCAAGTTAAAACGAGAACATATTTTGTTTGTACAAGTGAAAAGGTTTTTAGAAGGCCACGAGATGGATCTACGGATTCCGTAACTATGCAACGTGTTGTCTGACATAGGGTGTCCTTcgtgtaaatgagatattttttAAAGGCAAACCCTTCTTGTATGATCATTTTCTGTAACTGTACGATCCATACATGTCAGGAACTTGGCCGTGTACATGAACAAAATGAGAATAAAAGACAAAATATCAAGCCAATCTGTCACATTCTGTGATGTCAAAGAGTAAGCAGGGGTTGATACGATATCTCCTTGTGGTCCCGCCAAAAAGTATCCCACCCCAATTGAGGCACCAGTCAGTCTGAAGAAGTGGTAGTAGGAATTCATATAGGCAGCAGTTTGATATAAGCATCAAAACAAAGGTGCTTTAAAAATTCAGCTGTACCATTCCAAGTCCATCGCGTCTTCACATTCCGTGGTTAGTTTGTGGATTAAGGCTGTTTTATGCAGAGATCTGGGGGAATATTCAACTGGATTTCCGATTCAGCCCCGCATTGTCATTTTTCTCACACACAGTTCCGTAAAGCTGAAGGCCCAACTCTAGAGGACTAACCAGTCTTTTTTGATGCTTCTTTTTCTTTctaagttgttgttttttgtgcAGAGACTCCCTCTTCTGATTGTGGAACACACTGTGTTCAGAAACAGCCCAACAGGTATGTCCCTGAGTTGAGCATTGCCCTGTCCAATATCATCAAAACAACGGTTGAAGAAAAACTAAAAGTAAAAGTttgaggaaaaacaaaaaaatgaataaatataAGCCATTGCAAATAGTGCCTTTGGATAgaactttctttaaaaaaaaacatattcctATGTATACATATATAGTGGTAACTCTTAATATAGCTTTTTGATTGTTTACTACACCTACACATGAGCTCTCTTGCTTTGTGTGGTTTTGAAGAGGGGGGAGTCAGGCCGAGTAGACAGGTCTGTGTTACACATTTGTGTCCTGCAGTAGGGGCTCTTTGGCCTCCCCGGGTGGGGGTGCTCTGGTATGAAAAGGGCCACCAAGAGTGCTAGCAGCACTGAGCATGCTCCGAAGAGAAAGGGTGGGCCAGGAATGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU474072 lncRNA upstream 21329 56942425 ~ 56942665 (+) True G418265
TU474071 lncRNA upstream 22035 56941754 ~ 56941959 (+) True G418264
TU474011 lncRNA upstream 95789 56864489 ~ 56868205 (+) False G418209
TU474012 lncRNA upstream 95789 56864489 ~ 56868205 (+) True G418209
TU474013 lncRNA upstream 99770 56863974 ~ 56864224 (+) True G418210
TU474104 lncRNA downstream 44766 57010186 ~ 57011064 (+) True G418297
TU474102 lncRNA downstream 48197 57013617 ~ 57015171 (+) True G418295
TU474130 lncRNA downstream 74316 57039736 ~ 57039941 (+) True G418323
TU474195 lncRNA downstream 177561 57142981 ~ 57143200 (+) True G418379
TU474215 lncRNA downstream 204815 57170235 ~ 57170470 (+) True G418399
NM_001124203.1 mRNA upstream 7672 56943843 ~ 56956322 (+) False LOC100135807
XR_005051970.1 mRNA upstream 8532 56955324 ~ 56955462 (+) True LOC118964777
XM_021603443.2 mRNA upstream 175341 56779858 ~ 56788653 (+) True dph5
XM_021603437.2 mRNA upstream 261838 56696618 ~ 56702156 (+) False serpinc1
XM_021603438.2 mRNA upstream 261838 56696637 ~ 56702156 (+) True serpinc1
XM_021603458.2 mRNA downstream 50508 57015928 ~ 57037694 (+) True LOC110524109
XR_005051954.1 mRNA downstream 60905 57026325 ~ 57026460 (+) True LOC118964761
XM_036979052.1 mRNA downstream 73697 57039117 ~ 57061390 (+) True nwd1
XM_021603461.2 mRNA downstream 99492 57064912 ~ 57074678 (+) False LOC110524113
XM_021603463.2 mRNA downstream 99492 57064912 ~ 57074722 (+) False LOC110524113
TU474030 other upstream 5829 56943838 ~ 56958165 (+) True LOC100135807
TU474058 other upstream 38818 56923924 ~ 56925176 (+) True G418251
TU473915 other upstream 234173 56726185 ~ 56729821 (+) True G418119
TU473866 other upstream 335377 56617890 ~ 56628617 (+) True G418077
TU472519 other upstream 1638723 55324645 ~ 55325271 (+) True G416857
TU475029 other downstream 399944 57365364 ~ 57367337 (+) True LOC110524119
TU475377 other downstream 918960 57884380 ~ 57899648 (+) True G419452
TU476101 other downstream 1447703 58413123 ~ 58416776 (+) False G420117
TU476694 other downstream 1977308 58942728 ~ 58944217 (+) True G420634
TU478964 other downstream 3728837 60694257 ~ 60695905 (+) True LOC110524226

Expression Profile