RNA id: TU474195


Basic Information

Item Value
RNA id TU474195
length 220
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G418379
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57142981 ~ 57143200 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acagtgaaataatctgtctgtaaacaattgctggaaaaattacttgtgtcatgcgcaaagtagatgtcctgaccgacttgccaaaactatagtttgttaacaagacatttgtggagtggttgaaaaatgttaagtatatgtaaacttccgacttcaactgtattgctcatctcatatgcatttaatgtattctataccatctactgtatcttgcctatgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU474130 lncRNA upstream 103040 57039736 ~ 57039941 (+) True G418323
TU474102 lncRNA upstream 127810 57013617 ~ 57015171 (+) True G418295
TU474104 lncRNA upstream 131917 57010186 ~ 57011064 (+) True G418297
TU474059 lncRNA upstream 177561 56963994 ~ 56965420 (+) True G418252
TU474072 lncRNA upstream 200316 56942425 ~ 56942665 (+) True G418265
TU474215 lncRNA downstream 27035 57170235 ~ 57170470 (+) True G418399
TU474247 lncRNA downstream 84654 57227854 ~ 57231401 (+) True G418428
TU475028 lncRNA downstream 206865 57350065 ~ 57350974 (+) True G419132
TU475031 lncRNA downstream 214789 57357989 ~ 57358207 (+) True G419135
TU475061 lncRNA downstream 236124 57379324 ~ 57379533 (+) True G419159
XM_021603468.2 mRNA upstream 9320 57116340 ~ 57133661 (+) True diras1a
XM_021603467.2 mRNA upstream 64694 57076800 ~ 57078287 (+) True c5h19orf25
XM_036977929.1 mRNA upstream 68252 57064912 ~ 57074729 (+) True LOC110524113
XM_036977930.1 mRNA upstream 68254 57064912 ~ 57074727 (+) False LOC110524113
XM_021603462.2 mRNA upstream 68255 57064912 ~ 57074726 (+) False LOC110524113
XM_036977932.1 mRNA downstream 57556 57200756 ~ 57264453 (+) True LOC110524118
XM_036977937.1 mRNA downstream 209143 57352343 ~ 57367627 (+) False LOC110524119
XM_036977936.1 mRNA downstream 209144 57352344 ~ 57367623 (+) False LOC110524119
XM_036977934.1 mRNA downstream 209144 57352344 ~ 57367624 (+) False LOC110524119
XM_036977933.1 mRNA downstream 209144 57352344 ~ 57367625 (+) False LOC110524119
TU474030 other upstream 184816 56943838 ~ 56958165 (+) True LOC100135807
TU474058 other upstream 217805 56923924 ~ 56925176 (+) True G418251
TU473915 other upstream 413160 56726185 ~ 56729821 (+) True G418119
TU473866 other upstream 514364 56617890 ~ 56628617 (+) True G418077
TU472519 other upstream 1817710 55324645 ~ 55325271 (+) True G416857
TU475029 other downstream 222164 57365364 ~ 57367337 (+) True LOC110524119
TU475377 other downstream 741180 57884380 ~ 57899648 (+) True G419452
TU476101 other downstream 1269923 58413123 ~ 58416776 (+) False G420117
TU476694 other downstream 1799528 58942728 ~ 58944217 (+) True G420634
TU478964 other downstream 3551057 60694257 ~ 60695905 (+) True LOC110524226

Expression Profile