RNA id: TU474247


Basic Information

Item Value
RNA id TU474247
length 836
lncRNA type intronic
GC content 0.42
exon number 2
gene id G418428
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57227854 ~ 57231401 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatatgaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattggccgtgcaaaattattcagcccccttaagttaatactttgtagcgtcaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgacattttttcccattcctccttgcaaaacagctcgagctcagggaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttttgTCTTTTGcatactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaacatcttccctgtccctgctgaagaaaggcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgtcgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacgacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtccta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU474215 lncRNA upstream 57384 57170235 ~ 57170470 (+) True G418399
TU474195 lncRNA upstream 84654 57142981 ~ 57143200 (+) True G418379
TU474130 lncRNA upstream 187913 57039736 ~ 57039941 (+) True G418323
TU474102 lncRNA upstream 212683 57013617 ~ 57015171 (+) True G418295
TU474104 lncRNA upstream 216790 57010186 ~ 57011064 (+) True G418297
TU475028 lncRNA downstream 118664 57350065 ~ 57350974 (+) True G419132
TU475031 lncRNA downstream 126588 57357989 ~ 57358207 (+) True G419135
TU475061 lncRNA downstream 147923 57379324 ~ 57379533 (+) True G419159
TU475189 lncRNA downstream 374180 57605581 ~ 57609228 (+) True G419276
TU475191 lncRNA downstream 379382 57610783 ~ 57611584 (+) False G419278
XM_021603468.2 mRNA upstream 94193 57116340 ~ 57133661 (+) True diras1a
XM_021603467.2 mRNA upstream 149567 57076800 ~ 57078287 (+) True c5h19orf25
XM_036977929.1 mRNA upstream 153125 57064912 ~ 57074729 (+) True LOC110524113
XM_036977930.1 mRNA upstream 153127 57064912 ~ 57074727 (+) False LOC110524113
XM_021603462.2 mRNA upstream 153128 57064912 ~ 57074726 (+) False LOC110524113
XM_036977937.1 mRNA downstream 120942 57352343 ~ 57367627 (+) False LOC110524119
XM_036977936.1 mRNA downstream 120943 57352344 ~ 57367623 (+) False LOC110524119
XM_036977934.1 mRNA downstream 120943 57352344 ~ 57367624 (+) False LOC110524119
XM_036977933.1 mRNA downstream 120943 57352344 ~ 57367625 (+) False LOC110524119
XM_036977935.1 mRNA downstream 120943 57352344 ~ 57367627 (+) False LOC110524119
TU474030 other upstream 269689 56943838 ~ 56958165 (+) True LOC100135807
TU474058 other upstream 302678 56923924 ~ 56925176 (+) True G418251
TU473915 other upstream 498033 56726185 ~ 56729821 (+) True G418119
TU473866 other upstream 599237 56617890 ~ 56628617 (+) True G418077
TU472519 other upstream 1902583 55324645 ~ 55325271 (+) True G416857
TU475029 other downstream 133963 57365364 ~ 57367337 (+) True LOC110524119
TU475377 other downstream 652979 57884380 ~ 57899648 (+) True G419452
TU476101 other downstream 1181722 58413123 ~ 58416776 (+) False G420117
TU476694 other downstream 1711327 58942728 ~ 58944217 (+) True G420634
TU478964 other downstream 3462856 60694257 ~ 60695905 (+) True LOC110524226

Expression Profile