RNA id: TU475012



Basic Information


Item Value
RNA id TU475012
length 202
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G419117
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57335370 ~ 57335571 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TAGTAAATAGTCTATTAACTTGTTGACAAGTTATCAAATggtatgttggattcacgtctccaactaaaccaaacatctaagttaaagaataggattaagccagtggctcagatgaaactatcctccattgtcaaccaaacacaattcaatcaTCTTTTtctaatacagtaaatagcctcaAGTTAAGGCTATCTTACTAACT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU475011 lncRNA downstream 411 57334622 ~ 57334959 (-) True G419116
TU474950 lncRNA downstream 80615 57246557 ~ 57254755 (-) True G419056
TU474929 lncRNA downstream 84816 57212400 ~ 57250554 (-) True G419039
TU474894 lncRNA downstream 168792 57166334 ~ 57166578 (-) True G419006
TU474881 lncRNA downstream 182358 57152803 ~ 57153012 (-) True G418993
TU475020 lncRNA upstream 8043 57343614 ~ 57343930 (-) True G419125
TU475036 lncRNA upstream 18377 57353948 ~ 57354150 (-) True G419140
TU475039 lncRNA upstream 22757 57358328 ~ 57358619 (-) True G419143
TU475040 lncRNA upstream 24283 57359854 ~ 57360178 (-) True G419144
TU475041 lncRNA upstream 24785 57360356 ~ 57361105 (-) True G419145
XM_021603466.2 mRNA downstream 220505 57078575 ~ 57114865 (-) True apc2
XM_021603459.2 mRNA downstream 319430 57011622 ~ 57015940 (-) True LOC110524110
XM_036977928.1 mRNA downstream 323969 57007649 ~ 57011401 (-) True LOC110524111
XM_021603455.2 mRNA downstream 333346 56985006 ~ 57002024 (-) False LOC110524108
XM_021603472.2 mRNA upstream 13399 57348970 ~ 57351000 (-) True LOC110524120
XM_036977939.1 mRNA upstream 108605 57444176 ~ 57457620 (-) False LOC110524122
XM_021603475.2 mRNA upstream 108605 57444176 ~ 57459501 (-) False LOC110524122
XM_036977940.1 mRNA upstream 124593 57460164 ~ 57537912 (-) False LOC110524123
XM_036977941.1 mRNA upstream 124593 57460164 ~ 57537912 (-) False LOC110524123
TU474707 other downstream 500775 56834026 ~ 56834595 (-) True G418830
TU474560 other downstream 623986 56710280 ~ 56711384 (-) True LOC110522975
TU474559 other downstream 625530 56708798 ~ 56709840 (-) False LOC110522975
TU473281 other downstream 1725640 55608835 ~ 55609730 (-) True G417527
TU472396 other downstream 2175103 55141315 ~ 55160267 (-) True LOC110524071
TU475541 other upstream 275488 57611059 ~ 57611567 (-) True G419603
TU475533 other upstream 284483 57620054 ~ 57626174 (-) True LOC110524128
TU475656 other upstream 364174 57699745 ~ 57705936 (-) True G419714
TU476193 other upstream 776816 58112387 ~ 58114060 (-) True G420193
TU476443 other upstream 1077557 58413128 ~ 58414143 (-) True G420421

Expression Profile