RNA id: TU475036


Basic Information

Item Value
RNA id TU475036
length 203
lncRNA type intronic
GC content 0.47
exon number 1
gene id G419140
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57353948 ~ 57354150 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAATTGCCGCTTGTTTGGACACCAGGAAGAggagcagcagctaatggggatcagtAATAAAATACTCCCCACCACCATCGACTCACAAGGGACAAATCTCACGAGGCGCTTCCTTTCCCTTTGTCTTGTCTCCTTGAGCTgaaggaagctagctagctaagtaaccCTACATCAGAGCCAAGTATTTAGGGGAGAAAACATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU475020 lncRNA downstream 10018 57343614 ~ 57343930 (-) True G419125
TU475012 lncRNA downstream 18377 57335370 ~ 57335571 (-) True G419117
TU475011 lncRNA downstream 18989 57334622 ~ 57334959 (-) True G419116
TU474950 lncRNA downstream 99193 57246557 ~ 57254755 (-) True G419056
TU474929 lncRNA downstream 103394 57212400 ~ 57250554 (-) True G419039
TU475039 lncRNA upstream 4178 57358328 ~ 57358619 (-) True G419143
TU475040 lncRNA upstream 5704 57359854 ~ 57360178 (-) True G419144
TU475041 lncRNA upstream 6206 57360356 ~ 57361105 (-) True G419145
TU475043 lncRNA upstream 7857 57362007 ~ 57362528 (-) True G419147
TU475050 lncRNA upstream 14340 57368490 ~ 57368727 (-) True G419149
XM_021603472.2 mRNA downstream 2948 57348970 ~ 57351000 (-) True LOC110524120
XM_021603466.2 mRNA downstream 239083 57078575 ~ 57114865 (-) True apc2
XM_021603459.2 mRNA downstream 338008 57011622 ~ 57015940 (-) True LOC110524110
XM_036977928.1 mRNA downstream 342547 57007649 ~ 57011401 (-) True LOC110524111
XM_021603455.2 mRNA downstream 351924 56985006 ~ 57002024 (-) False LOC110524108
XM_036977939.1 mRNA upstream 90026 57444176 ~ 57457620 (-) False LOC110524122
XM_021603475.2 mRNA upstream 90026 57444176 ~ 57459501 (-) False LOC110524122
XM_036977940.1 mRNA upstream 106014 57460164 ~ 57537912 (-) False LOC110524123
XM_036977941.1 mRNA upstream 106014 57460164 ~ 57537912 (-) False LOC110524123
XM_036977942.1 mRNA upstream 106014 57460164 ~ 57537912 (-) True LOC110524123
TU474707 other downstream 519353 56834026 ~ 56834595 (-) True G418830
TU474560 other downstream 642564 56710280 ~ 56711384 (-) True LOC110522975
TU474559 other downstream 644108 56708798 ~ 56709840 (-) False LOC110522975
TU473281 other downstream 1744218 55608835 ~ 55609730 (-) True G417527
TU472396 other downstream 2193681 55141315 ~ 55160267 (-) True LOC110524071
TU475541 other upstream 256909 57611059 ~ 57611567 (-) True G419603
TU475533 other upstream 265904 57620054 ~ 57626174 (-) True LOC110524128
TU475656 other upstream 345595 57699745 ~ 57705936 (-) True G419714
TU476193 other upstream 758237 58112387 ~ 58114060 (-) True G420193
TU476443 other upstream 1058978 58413128 ~ 58414143 (-) True G420421

Expression Profile