RNA id: TU475031


Basic Information

Item Value
RNA id TU475031
length 219
lncRNA type intronic
GC content 0.46
exon number 1
gene id G419135
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57357989 ~ 57358207 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGTCTGGAACCAGGTGACCCAAGGGCAGACTCCAAGGTAATAAGTCTATAGATAGAAGACTGACATTTTTGGGGTGTGCAGGCTTGAAGCTTTTTCTCATCATTGTTTCATCTTGGTATCTGAGTCTAAATGTTTTGTGGTCAGAGGATGGCCCCTTCTAACTCATGACATTCGCCCCTTGTGAATCGAAGAATGGGAGGCACGTGTTAAAACCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU475028 lncRNA upstream 7015 57350065 ~ 57350974 (+) True G419132
TU474247 lncRNA upstream 126588 57227854 ~ 57231401 (+) True G418428
TU474215 lncRNA upstream 187519 57170235 ~ 57170470 (+) True G418399
TU474195 lncRNA upstream 214789 57142981 ~ 57143200 (+) True G418379
TU474130 lncRNA upstream 318048 57039736 ~ 57039941 (+) True G418323
TU475061 lncRNA downstream 21117 57379324 ~ 57379533 (+) True G419159
TU475189 lncRNA downstream 247374 57605581 ~ 57609228 (+) True G419276
TU475191 lncRNA downstream 252576 57610783 ~ 57611584 (+) False G419278
TU475192 lncRNA downstream 252576 57610783 ~ 57611756 (+) False G419278
TU475193 lncRNA downstream 252576 57610783 ~ 57611633 (+) True G419278
XM_036977932.1 mRNA upstream 93536 57200756 ~ 57264453 (+) True LOC110524118
XM_021603468.2 mRNA upstream 224328 57116340 ~ 57133661 (+) True diras1a
XM_021603467.2 mRNA upstream 279702 57076800 ~ 57078287 (+) True c5h19orf25
XM_036977929.1 mRNA upstream 283260 57064912 ~ 57074729 (+) True LOC110524113
XM_036977930.1 mRNA upstream 283262 57064912 ~ 57074727 (+) False LOC110524113
XM_021603473.2 mRNA downstream 21890 57380097 ~ 57427323 (+) False LOC110524121
XM_021603474.2 mRNA downstream 21890 57380097 ~ 57427323 (+) True LOC110524121
XM_036977948.1 mRNA downstream 269098 57627305 ~ 57636788 (+) False tmem259
XM_036977947.1 mRNA downstream 269101 57627308 ~ 57641111 (+) False tmem259
XM_036977946.1 mRNA downstream 269102 57627309 ~ 57641111 (+) True tmem259
TU474030 other upstream 399824 56943838 ~ 56958165 (+) True LOC100135807
TU474058 other upstream 432813 56923924 ~ 56925176 (+) True G418251
TU473915 other upstream 628168 56726185 ~ 56729821 (+) True G418119
TU473866 other upstream 729372 56617890 ~ 56628617 (+) True G418077
TU472519 other upstream 2032718 55324645 ~ 55325271 (+) True G416857
TU475029 other downstream 7157 57365364 ~ 57367337 (+) True LOC110524119
TU475377 other downstream 526173 57884380 ~ 57899648 (+) True G419452
TU476101 other downstream 1054916 58413123 ~ 58416776 (+) False G420117
TU476694 other downstream 1584521 58942728 ~ 58944217 (+) True G420634
TU478964 other downstream 3336050 60694257 ~ 60695905 (+) True LOC110524226

Expression Profile