RNA id: TU475614


Basic Information

Item Value
RNA id TU475614
length 2757
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G419673
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57638288 ~ 57641101 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGAATGCTTCTACTGCACTTGGTTTACTGAACagttaaatacatttgaatgagaGGAATCTAGTCCATCACAGATCGAAGGGTTCATTTATCATTGTCTAAAATTAACTACAAATGGATAGCAACTGTTGCAAGGCTACAATCATCCCGTTTTCTCTCACAGAACGGAATATAGGCACAGATAAAGAAACTGATCAGAAAACCTCATTGACggaacattttttttcttctcttatCGGTAAAAGCTTCCCCTAGAATGAACTCAAAAGACTTCTTTAAACTGACTTGTCATATTGCACAATTTGGACAACCTTCTCATCCCATAACCACATCCTCTGTCCTGCCCGTTGCATAGCCTTGACTACATCTCCACACAACTCACTGAGCAGAAATTACGCTAACCCCTCGTGTCTCAATAGAACAATGATATTTTGCGAAATGTCCCTTGATTATCGCCATTCTGTTGAGAAACAACCCATTTTCCTCTGATATGAGGCCAACAAGGGCAATCTCAACTTGCACTAATCTCTCATTCGGAATCATATAAGGTATCATTCAAAATAAAAGCTCTCTGGTCAGATTGTTCTCAATTCAAACAGCTGAGGACGAAGACGCCGACCACACCTGTCAATGACTTCTGATCCTTCCCTGACCGTTTATGTCTATAGAGTTACAATGTCAAAACCTCTCGACTTGTGTTATACCCTGTCCATGTTAGTACCTTGTTCAGCTAGTTCCAGAAAAGGGGAAGCATGATGCATGTCAGGTCCATCTGAGTACAGGAAAACAATGTTTGTCTTTAGACCCTAGCAAATACAACTAGCATCACAGTAGCATTTTACAAGCCAGTTATTTAGTCTCCCGTGAGCTATGGAATAGAGCAGTGGCCACAACAGCCGTGGAAGGTTTTTAACATTGTGCAGCTTTATCATAATCTCCTGAAGGTTTTGAAACAAGAACATTGATGAAAGATAAAATATTAATCCTAAATATATTTTTCTACAAAATTAAATGCCCCCTAGGGTCCAATATATGCTTTTTCTTCATAACTATCCAGTTGGGCAGCTGAATGGTAGATCGCAATGACAAATGTAATGGAGATGGGTTCGGCTGGGTACAATGGCTTTACCCTGAAGCTGTTCAACATCGCCTGGTATTGTCTTGTGCCAGTCTGGGGCAAAGATCTGTGTGTTTGAGCTTGAAATGGGCCTCAGTCAGCTGACGCCATGAACCAGAAAACTTCCTTGTGATGAAGCGCATTTCTTTTTTACAGTCACATGCTCCTCTTTTGGAATACAGTCTAAGGGGCCATGGGAACAAATATTGACTTAAATCATTTTGTTTGATGTGCACATGACTAGTGAAGCGATTCTAATGTGAAAGACAAATACAAAACATGGTGATGAGAGAATTGGTTGGCTAGCAGTACACAGAAAAGCTCCCAGGGGCGGACCAATGACGCAGTTTCACTCAAAAGGGGTTAAGATGAGAGAAACCGCAATGATGGCCGCTCTTCTTCAGCTCAAGAAGTACGGGGAGCAACTGCCAATCGTCATAAGAGAAGCGGACAGGGGGGAAAAAATCTGAACAAGAGCAAGCAGGTCTGCTTAACACTCCAAAGAATGGATGAAAACTCCATTTCCCATGATGCTCCACTCAGGGCTAGTGCTAGCTTGTGGAGCCGGTTGCCAGTTACGACTACAACCTCCAAACTGGAGGAGTTGAGCGCCTGTGAAAAAGTGGTGCGTGAAGTATCTACACAAACCACAGCAACATTACTAGCCTACAGTTCTGAAAGAAAAATGACCAACTCGGATACTAGAGCAACTCAGAAACACAGGGTTGTATTCGTATTTTCTTTTTCTGGGTTCGAGAACCAGATGGAATGAATGACTAGGATACGAGTACGTGTTACAGCCTTGTTATGACTGGTATGGTAGTCAACTGTGCTCTCAAAAAGAAAACGCATAGAGTACACTGCCATTTCCAAAGCCCGTCGAGACACCTAACCAAAAGAAACATCCTTTAAGGAATTGTACATCAACGCAATAGGATTGCCGCCTCTCTATTTTACAAATCAACTTTCAATCATAAACACAAATATCACATGGCAAAATGTCATGGTAGCCTTTCACAAACGATTCCACACCTTTGAAGCAAAGTTGGTGTATCACACATAATTTGAGCAAAAACTCTGCGACGGATGGAAAAAGTCACTGTCCCACTAAGGATGGGGAAACTAAAAGCAAAACAAAACATTATCGTAGCAGAGATtctagaggagagtggaggggggcGCCTTTTCTTAGCTTTCCATCCCTCGCTTCTCCTTGGTGTCGTAAGAATGAGATTACAGTAATATAGCCACGGCGGCAATCTTGCGGTGTTGGAAGAGGAATTGAGGGGGGAGAAGACATGTTGCCTCTGCGTGTGGGAGCATACGTGAGTTGGAGTAGGGGGGCTCAGGACGGAGTGGGGCTGGGGGGTTCCTCTGTCTTGGGCTCCCAGTCTGTGGGGCTTTGCCCAGGGCTCTCTGGCTCCCCTGCCCTACTGCAGtctgtgtgtggaggaggagaaggaggaaggaggaagggacTGACACTAGAGAGACTAgtctctgcttcctgaagtcctcccattggaggagagggaggaagaggcggGCCTAAGCCAGCTGCACTGCTGCTGCAGGCCCCTACGGTTTTGATTTCCACTGGAACCAAGCTGGGATTGAGGCCATCtgtaccctctcctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU475489 lncRNA downstream 188961 57444184 ~ 57449327 (-) True LOC110524122
TU475454 lncRNA downstream 258929 57379051 ~ 57379359 (-) True G419526
TU475050 lncRNA downstream 269561 57368490 ~ 57368727 (-) True G419149
TU475043 lncRNA downstream 275760 57362007 ~ 57362528 (-) True G419147
TU475041 lncRNA downstream 277183 57360356 ~ 57361105 (-) True G419145
TU475617 lncRNA upstream 142 57641243 ~ 57641636 (-) False grin3bb
TU475618 lncRNA upstream 1386 57642487 ~ 57642929 (-) False grin3bb
TU475629 lncRNA upstream 20224 57661325 ~ 57661537 (-) True G419687
TU475630 lncRNA upstream 22657 57663758 ~ 57672663 (-) True grin3bb
TU475644 lncRNA upstream 42230 57683331 ~ 57683565 (-) True G419702
LOC110524128 mRNA downstream 11160 57612040 ~ 57627128 (-) False LOC110524128
XM_021603481.2 mRNA downstream 32760 57586885 ~ 57605528 (-) False plppr3b
XM_021603482.2 mRNA downstream 32760 57586885 ~ 57605528 (-) True plppr3b
XM_036977940.1 mRNA downstream 100376 57460164 ~ 57537912 (-) False LOC110524123
XM_036977941.1 mRNA downstream 100376 57460164 ~ 57537912 (-) False LOC110524123
XM_036977944.1 mRNA upstream 119 57641220 ~ 57750792 (-) False grin3bb
XM_036977945.1 mRNA upstream 119 57641220 ~ 57750792 (-) False grin3bb
XM_036977949.1 mRNA upstream 130535 57771636 ~ 57862459 (-) False wdr18
XM_036977950.1 mRNA upstream 130535 57771636 ~ 57862459 (-) True wdr18
XM_021603488.2 mRNA upstream 225461 57866562 ~ 57874861 (-) False LOC110524131
TU475533 other downstream 12114 57620054 ~ 57626174 (-) True LOC110524128
TU475541 other downstream 26721 57611059 ~ 57611567 (-) True G419603
TU474707 other downstream 803693 56834026 ~ 56834595 (-) True G418830
TU474560 other downstream 926904 56710280 ~ 56711384 (-) True LOC110522975
TU474559 other downstream 928448 56708798 ~ 56709840 (-) False LOC110522975
TU475656 other upstream 58644 57699745 ~ 57705936 (-) True G419714
TU476193 other upstream 471286 58112387 ~ 58114060 (-) True G420193
TU476443 other upstream 772027 58413128 ~ 58414143 (-) True G420421
TU477090 other upstream 1385002 59026103 ~ 59036299 (-) True G420982
TU477230 other upstream 1491769 59132870 ~ 59138257 (-) True lsg1

Expression Profile