RNA id: TU475669



Basic Information


Item Value
RNA id TU475669
length 219
lncRNA type intronic
GC content 0.50
exon number 1
gene id G419726
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57716535 ~ 57716753 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccgacacattggtgcggtggGCTtacgggttaagcaagcagtgtgtcaagaagcagtgcggcttggcagggtcgtatttcggaggatgcatgcctctcaaccttcacctctcccgagtccgtacgggagttgcagcgatgggaccaGACtggaactaccaattggatatcacaaaattgggaagAATATGCCCAAAAACAAAAAAAGGATGTTTAATgg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU475662 lncRNA downstream 9840 57706377 ~ 57706695 (-) True G419719
TU475654 lncRNA downstream 22287 57693939 ~ 57694248 (-) True G419712
TU475644 lncRNA downstream 32970 57683331 ~ 57683565 (-) True G419702
TU475630 lncRNA downstream 43872 57663758 ~ 57672663 (-) True grin3bb
TU475629 lncRNA downstream 54998 57661325 ~ 57661537 (-) True G419687
TU475679 lncRNA upstream 8840 57725593 ~ 57725885 (-) True G419736
TU475760 lncRNA upstream 125100 57841853 ~ 57851937 (-) True G419815
TU475779 lncRNA upstream 183534 57900287 ~ 57933416 (-) True G419834
TU475845 lncRNA upstream 268471 57985224 ~ 57985552 (-) True G419900
TU476175 lncRNA upstream 305533 58022286 ~ 58022803 (-) True G420184
LOC110524128 mRNA downstream 89407 57612040 ~ 57627128 (-) False LOC110524128
XM_021603481.2 mRNA downstream 111007 57586885 ~ 57605528 (-) False plppr3b
XM_021603482.2 mRNA downstream 111007 57586885 ~ 57605528 (-) True plppr3b
XM_036977941.1 mRNA downstream 178623 57460164 ~ 57537912 (-) False LOC110524123
XM_036977949.1 mRNA upstream 54883 57771636 ~ 57862459 (-) False wdr18
XM_036977950.1 mRNA upstream 54883 57771636 ~ 57862459 (-) True wdr18
XM_021603488.2 mRNA upstream 149809 57866562 ~ 57874861 (-) False LOC110524131
XM_021603487.2 mRNA upstream 149809 57866562 ~ 57874864 (-) True LOC110524131
XM_021603489.2 mRNA upstream 159575 57876328 ~ 57881714 (-) True LOC110524132
TU475656 other downstream 10599 57699745 ~ 57705936 (-) True G419714
TU475533 other downstream 90361 57620054 ~ 57626174 (-) True LOC110524128
TU475541 other downstream 104968 57611059 ~ 57611567 (-) True G419603
TU474707 other downstream 881940 56834026 ~ 56834595 (-) True G418830
TU474560 other downstream 1005151 56710280 ~ 56711384 (-) True LOC110522975
TU476193 other upstream 395634 58112387 ~ 58114060 (-) True G420193
TU476443 other upstream 696375 58413128 ~ 58414143 (-) True G420421
TU477090 other upstream 1309350 59026103 ~ 59036299 (-) True G420982
TU477230 other upstream 1416117 59132870 ~ 59138257 (-) True lsg1
TU478587 other upstream 2384012 60100765 ~ 60101056 (-) True G422347

Expression Profile