RNA id: TU475303


Basic Information

Item Value
RNA id TU475303
length 2268
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G419380
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57771648 ~ 57773938 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttttatttcccATGATTTCAGAAAGGTACAAAAACACAAGcatacaaaaacacaaaaaaagtaCAAATCCAGTTGGtctgtttgtctttattagaGGAACAAAACAATTAATCCCCCACACTGAACACTTCACTCTTCCAATCCTCAGAAGCGCCATCTCACGTGCTGCCCCCCCCCAACGGTGAGTTAATTGGATTCAATGTTGGGTTTCGTGTAAGTCGCTCTAGAAGTTCTAAAGCTGGGATGGGCAACTGATGGGGGTcccaaaaaaatctgaactcaccATGAGAGGCCGCAGTGGCTCGTGGGTCtgtgtacccacatccatacccacacatgcagtcaagAGCCGGCcttagccttttgggggccctaagtggAATTGTGTTAAGGGTCCCTGCCTACCTTGCAATCAAAATATTTTTGCAGGCCTCCCTTGACACCAGAGACAAAACATTGACGTTTtagagttaatttcctgcaattctacacattttgccgtgGGGCATAGCAATTACTTCCCAATGTAATGCAATTCTATTAATTTTGCCATGGAGCGGAGAAAAATtggcagttttacagctaatttcctgcaattctacacgttGCCATAGTTGCTATACAAATGTTTGCAGTTtctaatatgatatctgagttagaatgactaacaaaatcaaaggGGGGCCCTCCGGTTGTTAAATCAACTATGATTAGAACACGTTTATATAGCTGGCTGGACTAATTTACCAATCCAatttttagctgacatgggctaattgtgtgactgtcagtgactgacaaaaGAGGAAAACTGCTCATGCAAAACCACATTTTGAAATGGTACTttatgtattctactattctgactcttaacagtaaattgagaccccAATTGAGATTATTTTTTACAACTACGGGCCTACAAAAGGAGAGTTGCCAATCCCTGTTCTAAAGCCATGGCTCTCTCTGGACAGGAGGGCTGCTGTCCTTATCAGTTCCCTCTTCTCTACCAAAGAGGCACACACATTGTCCTGATCTCATCAAAGCAGGCAAATGAGAAAAAGACGAAAATCAACCACTATTTCTATGGCGCTGCCTCTAATTTAGTGCCCCGGGTGGAGAATTAGCAGTGATGAGAGGAAGAGCGATTTCTGGAGGATTCTGAAAACTGATTCTGCAGTTGTATAGCGTTGCTGGGCACTGCACAACCAAATCCATGATTGCTACAGGCACAGAAAAACTGTACACAGTCTTCAGGCTAGTTCCTCAGGGTTAATCAAACATATTCCTCTACTCTTCCgtattgttttttttaacacCACCGTGAGCTGTTTTTAGCCAAACAGGTTAACACAGAGTATGTGCATATTGCTAATGGGAAAACAGTTTTGCTTGACAGAAGGTGAAGGGGACCTATGAACCATGGTGGTCATACCTATTGGGTGACTGAAATTAACACCAGCCTCATCGATGCTAAGCCAAACACACCTGGGTGCACATCATGTCCTTGTCACATAAATTCTTAGAATCTATTAACTGGTTGAATGCTATAGAACTTGGCCAAGCCGAGGTAaacaaaaatgaaaataaaaaggaGAGGATAATGCAGGAATCTGAGGTTAGCCAGATTACAAAAAGGATGAAAGGTCAGAGGGCACTAACTGGATACTGTTACACCGATTTTTGGCTGATGGGATTTTTGGCCTTATAGGCAGTGGTGATGAGTGTGAAGGAACAGGGCTGCGAGTTGAGGAGGTCAAGGGACGTCAATATAGCGCTAAGATCAATTATGTCGCTCTATCTGGCTGCACTTGACTACTGCAAGTAGCCTGTGGCTAACATTGAACATGTCGCACAAACAAGGTGAGCACTTTTTTTTCATGTTAAATTAACTCCTTTATCCTAAATATGGCGAGGGATCATGATACAAGCAATGCGGTCCATGGTATAACTTTAACACCTGAAGTCCTGCTGAACATACACTCTCCCTTACAAAACAAACACTATGAATGACACACACTAACTTATATTTCCCTAGCCTACCGGTCTGTAGTGAGGGGGGGCTTGCAGTGTCTTCCCTCCCCCTAGTAGGGTCCCTGCTGGTGGGATGGGGGAGCCGTGGCCAGGGGTGGTGGCTCTTCTCTAGCTGGGCTTGGTGAGGAGCTGTGTGGAGAAGTCGTACAGGTCCTTGTTAACCTTCTTCAGCGTTCTCACTTCCTCCTCCAGCTCCGACACACGCACCTTGGTGTTCTCGCCATCACCAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU475279 lncRNA upstream 37118 57734199 ~ 57734530 (+) True G419357
TU475267 lncRNA upstream 59022 57712414 ~ 57712626 (+) True G419345
TU475260 lncRNA upstream 71609 57699765 ~ 57700039 (+) True G419338
TU475248 lncRNA upstream 83578 57687831 ~ 57688070 (+) True G419326
TU475228 lncRNA upstream 111345 57660091 ~ 57660303 (+) True G419307
TU475372 lncRNA downstream 89860 57863798 ~ 57864930 (+) True G419448
TU475374 lncRNA downstream 91268 57865206 ~ 57884145 (+) True G419449
TU475384 lncRNA downstream 123458 57897396 ~ 57900379 (+) True G419459
TU475846 lncRNA downstream 211758 57985696 ~ 57985937 (+) True G419901
TU475878 lncRNA downstream 259497 58033435 ~ 58035576 (+) True G419927
XM_036977947.1 mRNA upstream 130537 57627308 ~ 57641111 (+) False tmem259
XM_036977946.1 mRNA upstream 130537 57627309 ~ 57641111 (+) True tmem259
XM_036977948.1 mRNA upstream 134860 57627305 ~ 57636788 (+) False tmem259
XM_021603473.2 mRNA upstream 344325 57380097 ~ 57427323 (+) False LOC110524121
XR_005051768.1 mRNA downstream 67984 57841922 ~ 57851518 (+) True LOC118964626
XR_002473545.2 mRNA downstream 100867 57874805 ~ 57906660 (+) True LOC110524134
XM_036977952.1 mRNA downstream 128164 57902102 ~ 57903229 (+) True sid1
XM_036977954.1 mRNA downstream 254823 58028761 ~ 58030894 (+) True LOC110524136
LOC110522977 mRNA downstream 310783 58084721 ~ 58086269 (+) True LOC110522977
TU475029 other upstream 404311 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 813483 56943838 ~ 56958165 (+) True LOC100135807
TU474058 other upstream 846472 56923924 ~ 56925176 (+) True G418251
TU473915 other upstream 1041827 56726185 ~ 56729821 (+) True G418119
TU473866 other upstream 1143031 56617890 ~ 56628617 (+) True G418077
TU475377 other downstream 110442 57884380 ~ 57899648 (+) True G419452
TU476101 other downstream 639185 58413123 ~ 58416776 (+) False G420117
TU476694 other downstream 1168790 58942728 ~ 58944217 (+) True G420634
TU478964 other downstream 2920319 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 3947599 61721537 ~ 61722024 (+) True G423922

Expression Profile