RNA id: TU475878


Basic Information

Item Value
RNA id TU475878
length 2108
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G419927
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58033435 ~ 58035576 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcagcactccaccaatcagacttTTATGatatagtggccagacggaagccactgctcagtaaaaaggtacatgacagcccacttgaaatttgccaaaaggctcctaaaggactcccaacctgatagagcttgagaggatctgcagagcagaatgggagaaacttcccaaatacaggtgtgccaagcttgtagcgtcatacccaagaagactcaatgctgtagtCAATACAAAAGgcgcttcagcaaagtactgagtacagggtctgaatactttaaaaTGTGATAgccgtttttttatttgtaataaatttgcaccCCAAAaattgtcattatgaggtattgtgtgtagaatgatgaggggaTAAAAAATAATTTGATCAATTTGAgaataatataacaaaatgtgggaaaagtcaaggggtctgaatactttccgaatgcactgtacatgcagcttctctttcGTAATAACTTGATGCCCTAGAAGACAAAATCAAGTAATGCTTACCAGATGAATGCATTAGTAATCTAATTACCAGTAAAGTTGTCTGTTTCGTTTTGGGACCTGGGAGAAAACACAATAACTCCAAATCAGTAGAAGAATTGTTcctgtggaaaatgtccaaatttcATAAATTTGACTAGTTAAGGTTAAATGAAAAGCTGAGAAAACCATGGAAAACACTTCTGATAAGACTTCAGTTCATCTCAGGTGCATATTTTGTGTGGTTGAACTACTGTCTGCTTGCAAAACAGTGTCAAATATAACATGTTACACACGTATTCACATTTTCTCAATAGATgctgaaagaaaaAACATTTGTTGTACCATTTTACAGTAAGAAATGCATTATTCTGCAGTAGTTAATGTTATATTACTCtacatgtgagaggttataggccGACAGTCAGTGTCCACATTTCAGTTACttttccatttaacccatatgAACTTAAATTAGGAATATACTATTTAGTCACATGGATACTTGTGAGCGGGATATCAaaggtgcatgtaaacagctTATCCCGAATAAGACCTTAAGCAGGATATGAGCTACAAACCGAAATGTATGTAAATGTGGTCATTGTTCAACAGAATTGCAGTTTGTCTACATGAACAAGGTGAGATTACATTACCTACAGAGTGCTTGTCAAAAAACTGTATTGCTAATTCAACACTGATTTAACCTTATTTGTACCTAAATAATACCATGAAAAAATGCCTCAATGCCTAGGTCAGAAGAGAATCTCGATGGTGTGCATCAGTGAAAGTAGAGATACCAGGTTAGCTTTTGCATTGAATCAAGTACAGTACATCTTTACTAATAACACTACTTGTGCTTTTAAATCTATTTGTAAAAGGTTGCACATTGGGTAATGCGCATAACTCACATTACTGTACTTGGCAAGGTTCTTCACTGAGCTCATTAAGTTTTGTCATTGAGTACCCTTGGTGATAAACCCTCCGCAGCAACATTTCTGTAGGATGATCAAATAATTATGTTATCTGTTAATGTAATACAATACATAAAACAACAGAAGTAAATTATTATTAATTGTTAATACTGACAAACGGAAACAATAATTTGGCAACTACATTTTTAAGTACAAGCCCAGATTCAATTCAACTACTTTTAAAAGTTCAAGATAACTTCTATAATAGCAGGTTGACTGAATCATAACCCAACAAAACATTGAGATAAATGGTGTAAACGTCGACTCAACAATTCTCACAGCGACGAAGAAAAAATATTAGATTGTTATTTTCAAGGTGGTGGGTAGGAGCAATGTACCGCTGCAATGGGTGGATCCACGGTTCTACTCTTAACCTCTGTAATAATGTGCTTAAGCAAACATTGTTCCAAAAGAGCTAGCTTCCTTTCCGTCCTTGTCCACCGCCCTCTACCATCCTGTCATCGCGTTGCTCTATTTGTCGATGAGCTTGGCCAAGCTCTGTCGTAGGTCATTCAGGTCGTAGATCTTGACATCCAGGACGTCGATGACCCGCTGAACCTCACTCTCCGCCCTATCCCGCTCCTCCAGAGAGGAAGCCAGAGTCTGCTCGGCTTTCTCCACCCGTTGCTCAAGTTCTGCATTCCGTGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU475846 lncRNA upstream 47498 57985696 ~ 57985937 (+) True G419901
TU475384 lncRNA upstream 133056 57897396 ~ 57900379 (+) True G419459
TU475374 lncRNA upstream 149290 57865206 ~ 57884145 (+) True G419449
TU475372 lncRNA upstream 168505 57863798 ~ 57864930 (+) True G419448
TU475303 lncRNA upstream 259497 57771648 ~ 57773938 (+) True G419380
TU475922 lncRNA downstream 50983 58086559 ~ 58086794 (+) True G419971
TU475932 lncRNA downstream 52090 58087666 ~ 58087897 (+) True G419980
TU475931 lncRNA downstream 54120 58089696 ~ 58089817 (+) True G419979
TU475928 lncRNA downstream 54417 58089993 ~ 58090475 (+) True G419976
TU475940 lncRNA downstream 69539 58105115 ~ 58106945 (+) True G419986
XM_036977954.1 mRNA upstream 2541 58028761 ~ 58030894 (+) True LOC110524136
XR_002473545.2 mRNA upstream 126775 57874805 ~ 57906660 (+) True LOC110524134
XM_036977952.1 mRNA upstream 130206 57902102 ~ 57903229 (+) True sid1
XR_005051768.1 mRNA upstream 181917 57841922 ~ 57851518 (+) True LOC118964626
XM_036977947.1 mRNA upstream 392324 57627308 ~ 57641111 (+) False tmem259
LOC110522977 mRNA downstream 49145 58084721 ~ 58086269 (+) True LOC110522977
XM_021603502.2 mRNA downstream 84489 58120065 ~ 58124398 (+) True LOC110524139
XM_021603503.2 mRNA downstream 122945 58158521 ~ 58160134 (+) True LOC110524140
XM_021603505.2 mRNA downstream 163811 58199387 ~ 58205370 (+) True LOC110524142
XM_021603511.2 mRNA downstream 276756 58312332 ~ 58370090 (+) False LOC110524143
TU475377 other upstream 133787 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 666098 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 1075270 56943838 ~ 56958165 (+) True LOC100135807
TU474058 other upstream 1108259 56923924 ~ 56925176 (+) True G418251
TU473915 other upstream 1303614 56726185 ~ 56729821 (+) True G418119
TU476101 other downstream 377547 58413123 ~ 58416776 (+) False G420117
TU476694 other downstream 907152 58942728 ~ 58944217 (+) True G420634
TU478964 other downstream 2658681 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 3685961 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 4069947 62105523 ~ 62105872 (+) True G424079

Expression Profile