RNA id: TU476250


Basic Information

Item Value
RNA id TU476250
length 1578
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G420236
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58109657 ~ 58111574 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaactacagttttatatctttgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtagattcatACTGTAAATGTGTACATCCACTGTATATCAATAATATACCCACTGTACATTTGTATATCTGCTCCTTCTCTATGTTCACTTTACCTagttgtatataatgtgtgtaaactTCGTTGTCTGTATTCGGTCTCTAAATGTTGTCTATCACAAGCAGCCGGCACCATATCACCAAGTACAACTCTGAGTATTTGTAAATGTACATAgtgaataaaggtgattctgatggTGCTTTCATAAGGTGTTTTGCTGGATTTATATGTTGTATAGAAATGTTTAATGTACCTGAAAAATGTTCTGTAGAGCagactttttttaaatttaaagtGAACTGCATATTGTGTTTTCATATCCCCCCCAACGTTATCTAaacttttgtttgttgtttttttttggggggggggggggggggggaacagcaATTTTAGATAGTTTCTCTTACTTGCAAAAGCCAAATGCTGCTCGTTTACATGGATTTCTTATTGTTTCTTGAGTATTTTTATAAGAAGTTGTAGTTGTGCCTTTTACTACGGTTATTTATATCAGGGAACGGTTTGGTTCTATCTCATATTTTCAAGTCTGTGGGCCCAACTTTGATTGATAGCTGTATGGCGATGTTTGAAGTTCAATGAACTTCATCAGATCAGTATGCTTATCTCAGCCGAGGATTTCATTTGATGAAGTGGGCAGGTAGGCAGCCAGGTGAGAACTGGACCCAGTTCTTGCATTTCTGTAGCACTTTCTTTTTTACTTTATTGAATGAATTGTTTTGGATGTTTCAGCTTTATGAACGTCATTGAGCTAGTTTAGTTTTGTTCTTGTATTTTTGTCATAACACAGTATTTGTTTTCAGTTGTCTCCCATTACGGCTTCTTCCCGTGTTGTATCTATATTTTAAAAGACATGTCATACCTCTCGTGGTACAACCACATAATAACATACAGTACCTGATCCAGATTAATTGTATCTTCTTCCCAGAACAACTGTCATAAGCAATTTCGTTGCCTAAAATATGTTTTGTGTTTACTGGGTATTTGAGTGTTCATGGACTGTATCCATGGAGATTTGTCTTTGTGTTGTTTATGTGTTCCTTCACACTGTCACATACTGGTTATTACATATGTGATTAAATTGTGACTATACTCACAGATGTGAAAGCCTATGTCCCCAAATGCTTGTTGAGGTGACCAATTTCCTTACTCTACTCTTCTGACCTGTGTAATAATGGAAAGGGCTGTAGAATATTCACTAGGTTACTATTTAGAAATAAACTTCCGCCATACATCGATCCCAGTATGCCTAACATCTATACCAACCTATAAATGCTCCTCTGTCTCAATGTGTAGGCCTATTGTTCTTAGATGTGTATCATATTTTATGACATCTAGATGTATATCAAATTCCTCTGTATTTTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476188 lncRNA downstream 15253 58090616 ~ 58094462 (-) True LOC110524138
TU476192 lncRNA downstream 19241 58089742 ~ 58090474 (-) False G420192
TU476191 lncRNA downstream 19241 58089994 ~ 58090474 (-) True G420192
TU476240 lncRNA downstream 22451 58086943 ~ 58087264 (-) True G420233
TU476167 lncRNA downstream 25992 58032121 ~ 58083723 (-) True G420179
TU476257 lncRNA upstream 24064 58135356 ~ 58135856 (-) True G420243
TU476262 lncRNA upstream 33196 58144488 ~ 58145156 (-) True G420248
TU476268 lncRNA upstream 43288 58154580 ~ 58154803 (-) True G420254
TU476328 lncRNA upstream 140346 58251638 ~ 58251915 (-) True G420313
TU476329 lncRNA upstream 141910 58253202 ~ 58253429 (-) True G420314
XM_021603498.2 mRNA downstream 270 58092311 ~ 58109445 (-) False LOC110524138
XM_021603499.2 mRNA downstream 270 58092311 ~ 58109445 (-) False LOC110524138
XM_021603500.2 mRNA downstream 270 58092311 ~ 58109445 (-) False LOC110524138
XM_021603501.2 mRNA downstream 270 58092311 ~ 58109445 (-) False LOC110524138
XM_021603496.2 mRNA downstream 27840 58033672 ~ 58081875 (-) True homer3b
XM_036976510.1 mRNA upstream 4506 58115798 ~ 58120039 (-) False pgpi
NM_001160660.1 mRNA upstream 4525 58115817 ~ 58120033 (-) True pgpi
XM_021603504.2 mRNA upstream 52626 58163918 ~ 58187049 (-) True LOC110524141
LOC118964716 mRNA upstream 266266 58377558 ~ 58380045 (-) True LOC118964716
XM_021603517.2 mRNA upstream 268488 58379780 ~ 58394796 (-) False LOC110524144
TU475656 other downstream 403779 57699745 ~ 57705936 (-) True G419714
TU475533 other downstream 483541 57620054 ~ 57626174 (-) True LOC110524128
TU475541 other downstream 498148 57611059 ~ 57611567 (-) True G419603
TU474707 other downstream 1275120 56834026 ~ 56834595 (-) True G418830
TU474560 other downstream 1398331 56710280 ~ 56711384 (-) True LOC110522975
TU476193 other upstream 1095 58112387 ~ 58114060 (-) True G420193
TU476443 other upstream 301836 58413128 ~ 58414143 (-) True G420421
TU477090 other upstream 914811 59026103 ~ 59036299 (-) True G420982
TU477230 other upstream 1021578 59132870 ~ 59138257 (-) True lsg1
TU478587 other upstream 1989473 60100765 ~ 60101056 (-) True G422347

Expression Profile