RNA id: TU476391


Basic Information

Item Value
RNA id TU476391
length 1249
lncRNA type antisense_over
GC content 0.50
exon number 1
gene id G420370
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58367276 ~ 58368693 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGAACCTCTTGAAGTTCTAAAAAAACGTTTGTCGTCAGCGACAAAACTCGAAACAGGCAGTCTATCTTAAGGGGCACCCAAGAAGTCTGTGCTACATTAAAATCATTTCTCTCTCCATACCCTGAGGTTTAAGTCACAATTATCTCACTATTCAGGTAGATACTGGATTTGGTTAAACTTATCATTCACAGAACTCTCAGAAACTAAATGAAATATACTAGTTTATGCTTACTGCATTCAAACAAATATAATCCCCCTAATTGTATGGTGCAACAGTTCTAAGACCCTGTAAATTGATCACAATCCTTACAATATTCCATTGAATAAATCTATATTCCATCATTTTGAGGAAGACATTTTCTCAGTAGAATTCCTTGCTCCATCAGGAGACGTTGGTGAGACTGGTTAGCCATGTAATTAGTTCTACCTTTGATCAGCTAGACATATACAGCAGTCTGTTTCTGACACTTTACCCCTAGAATCAATTACAGAAAACAGGACTAAAAAGTCCCATCTGGCACAAAGGAGAAAAAAAGAGGATATAACGATACTTCTTGTTCTACAAGATTAAACGGAGGGAAAGTGGTCAGTGTAAAGGTGTCTTCAGTGTAAAGGGACTGTTGTCATTACAGACTGTTGTCAAAAAACCCACCCTGCACGTCCAATTGCTGCTGGGACCCACGAACCAAGGCAGGGACTGAATGAGGTGCTGGGTGGGCTAGGGTTGGTGTTACGTGCCAAGCCGTAGGTACGCTACACTATTGCCTTCCTGACCCAGTTCTCTGTCCATATCGTCTCTGTCGTCCCCGTCCAGCCCGGGGCTCAACGTCCTGAGATGGCCGGGGCTCCTAACTGACATGGTGGTCAGACTGAGGGCCCGGCcagggtgaggggaggggggcCGGTGTCTGGTGCTGCTGCTGGGCTCTGGGGATTGAGACAGGGCCGGGGTCTTCCTAGAAGTCTCTCCCCCCAGTGACATCTCCTCCTCGGGTGGGCTCTCCAGGTCTGACTCGACgtcgccctcctcctcctcctccagggtaAGTTCAAACTGGAACTTGTCCCCTGTGGAGGTGCAGCAGCCCCCCGCCATGGCCTCCAGGGCCCCTGGCCCCCCGTCAAGGTCCCTGTCCTCGAGGGTGGGTGAGGGGCTGCGCTGGATCATACTCTGGTACCACTCCCGGTTGTCCTCTAGCGTGTCCAGAATGTCCTGGGCGTCAGGGTGGACCAGGTCAGCCCACGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476356 lncRNA downstream 78970 58288070 ~ 58288306 (-) True G420341
TU476354 lncRNA downstream 80459 58286493 ~ 58286817 (-) True G420339
TU476353 lncRNA downstream 82123 58284918 ~ 58285153 (-) True G420338
TU476351 lncRNA downstream 84347 58282728 ~ 58282929 (-) True G420336
TU476342 lncRNA downstream 96251 58270747 ~ 58271025 (-) True G420327
TU476384 lncRNA upstream 383 58368907 ~ 58370010 (-) False G420368
TU476383 lncRNA upstream 863 58369387 ~ 58369790 (-) True G420368
TU476385 lncRNA upstream 4635 58373159 ~ 58373978 (-) False G420369
TU476387 lncRNA upstream 4745 58373269 ~ 58374034 (-) False G420369
TU476388 lncRNA upstream 4745 58373269 ~ 58373978 (-) False G420369
XM_021603504.2 mRNA downstream 180227 58163918 ~ 58187049 (-) True LOC110524141
XM_036976510.1 mRNA downstream 247237 58115798 ~ 58120039 (-) False pgpi
NM_001160660.1 mRNA downstream 247243 58115817 ~ 58120033 (-) True pgpi
XM_021603500.2 mRNA downstream 257831 58092311 ~ 58109445 (-) False LOC110524138
LOC118964716 mRNA upstream 9034 58377558 ~ 58380045 (-) True LOC118964716
XM_021603517.2 mRNA upstream 11256 58379780 ~ 58394796 (-) False LOC110524144
XM_036977959.1 mRNA upstream 11256 58379780 ~ 58409320 (-) False LOC110524144
XM_021603522.2 mRNA upstream 48348 58416872 ~ 58454099 (-) False mast3b
XM_021603520.2 mRNA upstream 48348 58416872 ~ 58475232 (-) False mast3b
TU476193 other downstream 253216 58112387 ~ 58114060 (-) True G420193
TU475656 other downstream 661340 57699745 ~ 57705936 (-) True G419714
TU475533 other downstream 741102 57620054 ~ 57626174 (-) True LOC110524128
TU475541 other downstream 755709 57611059 ~ 57611567 (-) True G419603
TU474707 other downstream 1532681 56834026 ~ 56834595 (-) True G418830
TU476443 other upstream 44604 58413128 ~ 58414143 (-) True G420421
TU477090 other upstream 657579 59026103 ~ 59036299 (-) True G420982
TU477230 other upstream 764346 59132870 ~ 59138257 (-) True lsg1
TU478587 other upstream 1732241 60100765 ~ 60101056 (-) True G422347
TU479791 other upstream 2690470 61058994 ~ 61071143 (-) True LOC110524239

Expression Profile