RNA id: TU476384


Basic Information

Item Value
RNA id TU476384
length 1104
lncRNA type antisense_over
GC content 0.37
exon number 1
gene id G420368
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58368907 ~ 58370010 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccaaacttttgactagtactgtacatCTGGGGTACAAGCATATTCTCCAACGTCTTACAATTCCTGTTGGTCCTTCCCTGTAGCATACTTGTTAAAAGTTATACAGCATTGGTGGAAAATGGATGTTTCAGTGTTTTGCTGTGGTCAATTGGCATTCGCATACTGTAGATAAAAGCTGTATCCCTGTGAAGAGCAGAACATTAATCAACTTGACAAAATTGAATGAGGCATTTAAGTCGAAGCATTACATCCAACGTATTAAGGTGCGACATTTCCCATGAAAAAAATTAGCATAATTCTAACAATTGATCAAATAACATGAATACAATCAACAGTTCAGAGAGAACATTGTGTTAAACATTTCATAATGACTTAGGCTGGCAGATGCTTTGGTTCAAATTCTAAACACACAATTTTCCCTATAAACTTGTTTCCCCTCAAGAACAAATTAAACAAGACATTAGGGGCTTATTCAGGCAAATGGGAAGTTATCAAATGTCAATACGGAAATTATTTTCTGTTGTGTTTTACAGGGAATCATATCATCTCTGTTCactacatttctatctgcaactttCAAAGCATCGCACCCTACTGGACAAAAACCCCTATTAGTCTACTCTGcggccctgtccagaaacaacccatagcccctaacccctagacacttgtggagatctgacaGGATTTCATAGGTTTAAGCTACAGTACATGACAATTTAACCACAATTTAACCACTCGGATAGGTTAGGTGGAATTATTACCACATTTATTACACCTATCCATTCCTCTCAGATCTACACAACCTTCAGTAAGCTGTCTAATAGAATCATGGTTTGGCTCAAGCGCTTCAGAACTGAATGAATTTACAACAGAGATTGTAAAGTGTTACTGGATGGTGGAGGCACCCTGATAACTATGCTTACAAagcacagagacaaacagacataGTGAAGACATCCCAAATATATAAAAGAAAACAACCATTTCATATCATATTTAAAAATGTGACAAACGTAAAACATGACCccataaaaacaaatacaattttacgAATATGAGTGTAGTGGTGGTGTTTGTCTAGATTTAAAACAACCCAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476390 lncRNA downstream 214 58368110 ~ 58368693 (-) True G420370
TU476391 lncRNA downstream 383 58367276 ~ 58368524 (-) False G420370
TU476356 lncRNA downstream 80601 58288070 ~ 58288306 (-) True G420341
TU476354 lncRNA downstream 82090 58286493 ~ 58286817 (-) True G420339
TU476353 lncRNA downstream 83754 58284918 ~ 58285153 (-) True G420338
TU476385 lncRNA upstream 3149 58373159 ~ 58373978 (-) False G420369
TU476387 lncRNA upstream 3259 58373269 ~ 58374034 (-) False G420369
TU476388 lncRNA upstream 3259 58373269 ~ 58373978 (-) False G420369
TU476389 lncRNA upstream 3259 58373269 ~ 58373675 (-) True G420369
TU476426 lncRNA upstream 11348 58381358 ~ 58382656 (-) True LOC110524144
XM_021603504.2 mRNA downstream 181858 58163918 ~ 58187049 (-) True LOC110524141
XM_036976510.1 mRNA downstream 248868 58115798 ~ 58120039 (-) False pgpi
NM_001160660.1 mRNA downstream 248874 58115817 ~ 58120033 (-) True pgpi
XM_021603500.2 mRNA downstream 259462 58092311 ~ 58109445 (-) False LOC110524138
LOC118964716 mRNA upstream 7548 58377558 ~ 58380045 (-) True LOC118964716
XM_021603517.2 mRNA upstream 9770 58379780 ~ 58394796 (-) False LOC110524144
XM_036977959.1 mRNA upstream 9770 58379780 ~ 58409320 (-) False LOC110524144
XM_021603522.2 mRNA upstream 46862 58416872 ~ 58454099 (-) False mast3b
XM_021603520.2 mRNA upstream 46862 58416872 ~ 58475232 (-) False mast3b
TU476193 other downstream 254847 58112387 ~ 58114060 (-) True G420193
TU475656 other downstream 662971 57699745 ~ 57705936 (-) True G419714
TU475533 other downstream 742733 57620054 ~ 57626174 (-) True LOC110524128
TU475541 other downstream 757340 57611059 ~ 57611567 (-) True G419603
TU474707 other downstream 1534312 56834026 ~ 56834595 (-) True G418830
TU476443 other upstream 43118 58413128 ~ 58414143 (-) True G420421
TU477090 other upstream 656093 59026103 ~ 59036299 (-) True G420982
TU477230 other upstream 762860 59132870 ~ 59138257 (-) True lsg1
TU478587 other upstream 1730755 60100765 ~ 60101056 (-) True G422347
TU479791 other upstream 2688984 61058994 ~ 61071143 (-) True LOC110524239

Expression Profile