RNA id: TU476387


Basic Information

Item Value
RNA id TU476387
length 766
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G420369
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58373159 ~ 58374034 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACTATTTGCGCACAGACAGATTTAAGAATATGCACAAAAATTATCAATTTAATAGGCATACAGGTTTCCATATTTATTGGCATTTTCACTTTGAACAACTTGAACTCCAGAAACTTTGGGCTTTAAAAATTATAAACAAAACGAAGCAAATTCTCTAAACAAATATTGGAGCGATAGATGTATACATTTTGAAAGGTATACTTGATTTTTTTTAGGCTCCAGAAAAATGTATtgaaagctagaatccttaattgaaacaacaatgtaactaaataaataaaaaggaatGGGCCTGGATAAATGTACCCACACTCTAATTCATAGactgagctatggatgcaagggaCTGACCCTCCACGCTATCAAAATTATAGTATGAACCATGTTtcgaggctatacagtgtttgtttacatttacattgtttacaaacattggagtaaaacaagcttatatttggggttctgatgggaaTATATTAGTCCAAAAATGCATGTCACAACTACAGATTCTATCGTTAAGATCTCTTTTTACAGACAAATATACTAGGAATAAATATCGGACTTGGAACAACATTGAGGATGAAAGGACGGACATAGAACAGAAGTACAACAGTAATGGCATGCCGTCGTGTGTCACTGTTTCAGAGCAAAGCAATAAAAAGGGACCAAGAGAACAAATTATCACCATTCTAACTTCTCAGCCAACACGTTTAACACTGAATGGCACTGATTTATGTATGTTTTACCCTCAATACAGTTGAGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476384 lncRNA downstream 3259 58368907 ~ 58370010 (-) False G420368
TU476383 lncRNA downstream 3479 58369387 ~ 58369790 (-) True G420368
TU476390 lncRNA downstream 4576 58368110 ~ 58368693 (-) True G420370
TU476391 lncRNA downstream 4745 58367276 ~ 58368524 (-) False G420370
TU476356 lncRNA downstream 84963 58288070 ~ 58288306 (-) True G420341
TU476426 lncRNA upstream 7324 58381358 ~ 58382656 (-) True LOC110524144
TU476451 lncRNA upstream 26525 58400559 ~ 58400767 (-) True G420429
TU476442 lncRNA upstream 37299 58411333 ~ 58413009 (-) True G420420
TU476444 lncRNA upstream 40447 58414481 ~ 58415479 (-) True G420422
TU476459 lncRNA upstream 46052 58420086 ~ 58420474 (-) True G420437
XM_021603504.2 mRNA downstream 186220 58163918 ~ 58187049 (-) True LOC110524141
XM_036976510.1 mRNA downstream 253230 58115798 ~ 58120039 (-) False pgpi
NM_001160660.1 mRNA downstream 253236 58115817 ~ 58120033 (-) True pgpi
XM_021603500.2 mRNA downstream 263824 58092311 ~ 58109445 (-) False LOC110524138
LOC118964716 mRNA upstream 3524 58377558 ~ 58380045 (-) True LOC118964716
XM_021603517.2 mRNA upstream 5746 58379780 ~ 58394796 (-) False LOC110524144
XM_036977959.1 mRNA upstream 5746 58379780 ~ 58409320 (-) False LOC110524144
XM_021603522.2 mRNA upstream 42838 58416872 ~ 58454099 (-) False mast3b
XM_021603520.2 mRNA upstream 42838 58416872 ~ 58475232 (-) False mast3b
TU476193 other downstream 259209 58112387 ~ 58114060 (-) True G420193
TU475656 other downstream 667333 57699745 ~ 57705936 (-) True G419714
TU475533 other downstream 747095 57620054 ~ 57626174 (-) True LOC110524128
TU475541 other downstream 761702 57611059 ~ 57611567 (-) True G419603
TU474707 other downstream 1538674 56834026 ~ 56834595 (-) True G418830
TU476443 other upstream 39094 58413128 ~ 58414143 (-) True G420421
TU477090 other upstream 652069 59026103 ~ 59036299 (-) True G420982
TU477230 other upstream 758836 59132870 ~ 59138257 (-) True lsg1
TU478587 other upstream 1726731 60100765 ~ 60101056 (-) True G422347
TU479791 other upstream 2684960 61058994 ~ 61071143 (-) True LOC110524239

Expression Profile