RNA id: TU476451



Basic Information


Item Value
RNA id TU476451
length 209
lncRNA type intronic
GC content 0.35
exon number 1
gene id G420429
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58400559 ~ 58400767 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATTCTTTATTTTAAGTTGGGTGCGTGCGGTGTTCAACACAACCATAGGTATAATAAGAACGAACACAATGGTCAGTTCCGGTACAAATGATAAAACGTCAGTTTCGGAACTACGGAATCATGGGAGATTGAGTTTCATAGTCAGACACTTTTAAATCATGAAATAAATACCTCAATAATTTGCTAAAAAGTATTTCCATGTGCTTACAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU476426 lncRNA downstream 17903 58381358 ~ 58382656 (-) True LOC110524144
TU476387 lncRNA downstream 26525 58373269 ~ 58374034 (-) False G420369
TU476385 lncRNA downstream 26581 58373159 ~ 58373978 (-) False G420369
TU476388 lncRNA downstream 26581 58373269 ~ 58373978 (-) False G420369
TU476389 lncRNA downstream 26884 58373269 ~ 58373675 (-) True G420369
TU476442 lncRNA upstream 10566 58411333 ~ 58413009 (-) True G420420
TU476444 lncRNA upstream 13714 58414481 ~ 58415479 (-) True G420422
TU476459 lncRNA upstream 19319 58420086 ~ 58420474 (-) True G420437
TU476464 lncRNA upstream 55598 58456365 ~ 58456602 (-) True G420442
TU476489 lncRNA upstream 77020 58477787 ~ 58477998 (-) True G420466
XM_021603517.2 mRNA downstream 5763 58379780 ~ 58394796 (-) False LOC110524144
LOC118964716 mRNA downstream 20514 58377558 ~ 58380045 (-) True LOC118964716
XM_021603504.2 mRNA downstream 213510 58163918 ~ 58187049 (-) True LOC110524141
XM_036976510.1 mRNA downstream 280520 58115798 ~ 58120039 (-) False pgpi
NM_001160660.1 mRNA downstream 280526 58115817 ~ 58120033 (-) True pgpi
XM_021603522.2 mRNA upstream 16105 58416872 ~ 58454099 (-) False mast3b
XM_021603520.2 mRNA upstream 16105 58416872 ~ 58475232 (-) False mast3b
XM_021603518.2 mRNA upstream 16105 58416872 ~ 58475233 (-) False mast3b
XM_021603519.2 mRNA upstream 16105 58416872 ~ 58475233 (-) True mast3b
XM_036977962.1 mRNA upstream 145617 58546384 ~ 58562388 (-) False LOC110524151
TU476193 other downstream 286499 58112387 ~ 58114060 (-) True G420193
TU475656 other downstream 694623 57699745 ~ 57705936 (-) True G419714
TU475533 other downstream 774385 57620054 ~ 57626174 (-) True LOC110524128
TU475541 other downstream 788992 57611059 ~ 57611567 (-) True G419603
TU474707 other downstream 1565964 56834026 ~ 56834595 (-) True G418830
TU476443 other upstream 12361 58413128 ~ 58414143 (-) True G420421
TU477090 other upstream 625336 59026103 ~ 59036299 (-) True G420982
TU477230 other upstream 732103 59132870 ~ 59138257 (-) True lsg1
TU478587 other upstream 1699998 60100765 ~ 60101056 (-) True G422347
TU479791 other upstream 2658227 61058994 ~ 61071143 (-) True LOC110524239

Expression Profile