RNA id: TU476101


Basic Information

Item Value
RNA id TU476101
length 3654
RNA type TUCP
GC content 0.44
exon number 1
gene id G420117
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58411240 ~ 58418268 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgacccctctgcaaaacatgacttagtacttggtggcaaaacccttgttggcaatcacagaggtcagacgtttctcgtagttggccaccaggtttgcagatcttctccaagtcattaaggtttcgaggctgacgtttggcaactcgaaccttcagctccctccacagattgtctatgggattaaggtctggagactggctaggccactccaggaccttaatgtgcttcttcttgagtcactcctttgttgccttggccatgtgttttgggtcattgtcatgctggaatacctatccacgacccattttcaatgccctggcagagggaaggaggttctcacccaagatttgacggtacatggccccgtccaccgtccctttgatgcggtgaagttgtcctgtccccttagcagaaaaaacacccccaaagcataatgtatccacctccatgtttgacggtgaggatggtgttcttggggtcataggcagcattcctcctcctccaaacacggcgagttgagttgatgccaaagagctccattttggtctcatctgaccacaacactttcaatcagttgtcctctgaatcattcagatgttcattggcaaacttcagatgggcatgtatatgtgctttcttgagcagggggaccttgcgggtgctgcaggatttcagcattcacggcgtagtgtgttaccaattgttttcttggtgactatggtcccagctgccttgagatcattgacaagatcctcccgtgtagttctgggctgattcctcaccattCTCATAATCATTgtaactccacgaggtgagatcttgcatagagccccaggccgagggaaattgacagttcttttgtgtttcttccatttgcgaattatcgcaccaactgttgtcaccttctcaccaagctgcttggcaatggttttgtagcccattccagccttgtctacaatcttgtccctgacatccttggagagctctttggtcttggccatggtggagagtttggaatctgattgattgattgcttctgtggacaggtgtcttttatacaggtaacaaactgagattaggagcaccctttaagagtgtgctcctaatctcagctcgttacctgtataaaagacacctgggagccagacatctttctgattgagagggggtcaaatacttatttccctcattaaaatgcaaatcaatttataaaatttttgacatgcatttttctggattttttttgttgttcaaataattgtaatggtaggttcaaataaacctaccattaaaattatagactgatcatttctttgtcagctggcaaacgtacaaaatcaacaggggatcaaatacttttttctccTCACTGTACataaatacatgtacagtacaaaGACATAAAACTATCATCTGTTCCTAATATCTAAGCCCTGGGTTCTGACTGAAGGTACGTGACACTCCTCCATCGTTGCCTCTTCCTTATGTCGTTTACAAAATTCATgtcaaaatatacattttcctTAGTGCACGTTACCCCAATGTAAACATCAACACACAGAAGAAGGAGATGAAAGAGGAATGGGTTTCTTACGCATGGACATTTTCACACGCACACTAGTCATTGTGCTCAAATCTGAGTCTAATACGTAGATAAAAGGTCAAAGGCTGCATTGAGGATCATTTGAAAATATGCACGCGGATCTTGTGGAAAGCTTCAACGGTTTATCTTTAGCTTGGTGGTGTCACCTGGACAGCTGAATTCTAGGATGTAGCCTAAAAAACAGGTTTGAGAGCAAAACTATCTGTGGCTTATCAAAACAATATCCTGTCAACAATTGCCTCTGTGACAGAGATTAGGTGACAGCATTTGATAGGATTAAAGTTCTATGCTTTAGAAGTACAAGCATTGGCAGCAAGCTCAAATTGCCATGCTACCATGATTTCAGCGAAATCATGTGGTATAAACCCTGTTGTCCATCAGAATCAGTACAGAGAAACCAGGAAACCCAGAAGTGGATGAGGTCGGGATGAACGAACATAATGATGAGGTTATGGCATAATATTGTGCAATATAATCAGCAGGTTTCAAAACGAACTAAACCAATAAGATTGGAAGAAATACCCTCTTTGTGATTTGGGTAAAAATGCTTAGAAATATAAACTAGCAAAATAATTGAAGCATTTGTAAAGGTGACTGCATTTTCTTGCTACTATCAAGCCTGCAAACAAGGGAATAAGAGCTATTTGTCAAAGAAGAAAGGCCCTCATTCCATAAGATATGGGTTAAgagaacaaaaacaaaacaaatctgtTTCATGGCAGCTAATACCATTTGTTAGTAATACAATGTCTTCACATCAACCAAAACCTGAACTAGccatagtgcattcggaaagtattcagaccccttgaccttttccacattttgttacgttacagccttattctaaaatgaattaaatagttaaatctacacacaataccccataatgacaatgtaaaAACAGGTTATTTCAAAACTAATATCATATTTTACATAAATatgcagaccctttactcagtactttgttgaaacatctttggtgattacagcctcgattcttcttgggtatgaccctacaagcttggcacacctgtatttggggagtttttcccattcttctctgcagatcctctcgagcACTGTGAAGTTGGATGGGGGGGTGTcgccgcacagctattttctctccagagatgttcgatcgggtccaagtctgggctctggctgggccactcaaggacattgagacttgtcctgaagccactcctgcgttgtcttggctgtgtgcttagggtcattggaGCAGGTTATCAtgaaggatttctctgtactttgctccgttcatctttccctcgatcctgactagtctcccactccctgccgctgaaaaacatccccacagcatgatgctgccaccaccatgcttcaccgtagggatggtgccaggtttcctccagacgtgacgcttggcattcaggccaaagagttcaatcttggtttcatcagaccagagaatcttgtttctcatggtctgagtcctttaggtgccttttgggaaacaccaagcgggctgtcatgtgccttttactgaggagtggcttctgtctggcagctctaccataaaggcctgatttggtggagtgctacagagatggttgtccttctggaaggttctcccatctcaacagaggaactctggagctctgtcagagtgaccattgggttcttggtcacctccctgaccaaggcccttcacccccgattgctcaggaagagtcatggtggttccaaacttcttccatttaagaatgatggaggccactgtgttcttggggaacttcaatgctgcagacattttttggtagccttccccagatctgtgcctcgacacaattctctATCGGAGCTCttaggacaattccttcaacctcatggcttggtttttgctctgacttgcactgtcaactgtgataccttatatagacaggtgtgtgcctttccaaatcatgtccaatcaattgaatttaccacaggtagaatccaatcaaattgtagaaacatcaaggatgatcaatggaaacaggatgcacctgagctcaatttcgagtctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476103 lncRNA upstream 130 58411240 ~ 58412993 (+) False G420117
TU476095 lncRNA upstream 130 58411250 ~ 58412993 (+) False G420117
TU476093 lncRNA upstream 130 58411324 ~ 58412993 (+) False G420117
TU476075 lncRNA upstream 23254 58389485 ~ 58389869 (+) True G420101
TU476067 lncRNA upstream 32818 58379916 ~ 58380305 (+) True G420093
TU476102 lncRNA downstream 410 58417186 ~ 58418268 (+) True G420117
TU476105 lncRNA downstream 1588 58418364 ~ 58418789 (+) True G420118
TU476106 lncRNA downstream 3644 58420420 ~ 58420673 (+) True G420119
TU476107 lncRNA downstream 4250 58421026 ~ 58421360 (+) True G420120
TU476109 lncRNA downstream 6324 58423100 ~ 58423510 (+) True G420122
XR_005051769.1 mRNA upstream 8234 58401429 ~ 58404889 (+) True LOC118964627
XM_021603511.2 mRNA upstream 43033 58312332 ~ 58370090 (+) False LOC110524143
XM_036977957.1 mRNA upstream 43033 58312335 ~ 58370090 (+) False LOC110524143
XM_036977958.1 mRNA upstream 43033 58327076 ~ 58370090 (+) False LOC110524143
XM_021603512.2 mRNA upstream 43033 58337839 ~ 58370090 (+) True LOC110524143
XR_005051587.1 mRNA downstream 64161 58480937 ~ 58482309 (+) True LOC118964530
XM_036977960.1 mRNA downstream 67267 58484043 ~ 58491225 (+) False LOC110524147
XM_021603532.2 mRNA downstream 83329 58500105 ~ 58505933 (+) False LOC110524149
XM_021603530.2 mRNA downstream 83331 58500107 ~ 58505933 (+) True LOC110524149
XM_021603534.2 mRNA downstream 96153 58512929 ~ 58539074 (+) False LOC110524150
TU475377 other upstream 513475 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 1045786 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 1454958 56943838 ~ 56958165 (+) True LOC100135807
TU474058 other upstream 1487947 56923924 ~ 56925176 (+) True G418251
TU473915 other upstream 1683302 56726185 ~ 56729821 (+) True G418119
TU476694 other downstream 525952 58942728 ~ 58944217 (+) True G420634
TU478964 other downstream 2277481 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 3304761 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 3688747 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 3866376 62283152 ~ 62306937 (+) False LOC110524265

Expression Profile