RNA id: TU476444


Basic Information

Item Value
RNA id TU476444
length 999
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G420422
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58414481 ~ 58415479 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGACATTGTATTACTAACAAATGGTATTAGCTGCCATGAAacagatttgttttgtttttgttctcTTAACCCATATCTTATGGAATGAGGGCCTTTCTTCTTTGACAAATAGCTCTTATTCCCTTGTTTGCAGGCTTGATAGTAGCAAGAAAATGCAGTCACCTTTACAAATGCTTCAATTATTTTGCTAGTTTATATTTCTAAGCATTTTTACCCAAATCACAAAGAGGGTATTTCTTCCAATCTTATTGGTTTAGTTCGTTTTGAAACCTGCTGATTATATTGCACAATATTATGCCATAACCTCATCATTATGTTCGTTCATCCCGACCTCATCCACTTCTGGGTTTCCTGGTTTCTCTGTACTGATTCTGATGGACAACAGGGTTTATACCACATGATTTCGCTGAAATCATGGTAGCATGGCAATTTGAGCTTGCTGCCAATGCTTGTACTTCTAAAGCATAGAACTTTAATCCTATCAAATGCTGTCACCTAATCTCTGTCACAGAGGCAATTGTTGACAGGATATTGTTTTGATAAGCCACAGATAGTTTTGCTCTCAAACCTGTTTTTTAGGCTACATCCTAGAATTCAGCTGTCCAGGTGACACCACCAAGCTAAAGATAAACCGTTGAAGCTTTCCACAAGATCCGCGTGCATATTTTCAAATGATCCTCAATGCAGCCTTTGACCTTTTATCTACGTATTAGACTCAGATTTGAGCACAATGACTAGTGTGCGTGTGAAAATGTCCATGCGTAAGAAACCCATTCCTCTTTCATCTCCTTCTTCTGTGTGTTGATGTTTACATTGGGGTAACGTGCACTAaggaaaatgtatattttgacATGAATTTTGTAAACGACATAAGGAAGAGGCAACGATGGAGGAGTGTCACGTACCTTCAGTCAGAACCCAGGGCTTAGATATTAGGAACAGATGATAGTTTTATGTCtttgtactgtacatgtatttatGTACAGTGAggagaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476442 lncRNA downstream 1472 58411333 ~ 58413009 (-) True G420420
TU476451 lncRNA downstream 13714 58400559 ~ 58400767 (-) True G420429
TU476426 lncRNA downstream 31825 58381358 ~ 58382656 (-) True LOC110524144
TU476387 lncRNA downstream 40447 58373269 ~ 58374034 (-) False G420369
TU476459 lncRNA upstream 4607 58420086 ~ 58420474 (-) True G420437
TU476464 lncRNA upstream 40886 58456365 ~ 58456602 (-) True G420442
TU476489 lncRNA upstream 62308 58477787 ~ 58477998 (-) True G420466
TU476491 lncRNA upstream 62887 58478366 ~ 58478835 (-) True G420468
TU476832 lncRNA upstream 89596 58505075 ~ 58507002 (-) True G420763
XM_036977959.1 mRNA downstream 5161 58379780 ~ 58409320 (-) False LOC110524144
XM_021603517.2 mRNA downstream 19685 58379780 ~ 58394796 (-) False LOC110524144
LOC118964716 mRNA downstream 34436 58377558 ~ 58380045 (-) True LOC118964716
XM_021603504.2 mRNA downstream 227432 58163918 ~ 58187049 (-) True LOC110524141
NM_001160660.1 mRNA downstream 294448 58115817 ~ 58120033 (-) True pgpi
XM_021603522.2 mRNA upstream 1393 58416872 ~ 58454099 (-) False mast3b
XM_021603520.2 mRNA upstream 1393 58416872 ~ 58475232 (-) False mast3b
XM_021603518.2 mRNA upstream 1393 58416872 ~ 58475233 (-) False mast3b
XM_021603519.2 mRNA upstream 1393 58416872 ~ 58475233 (-) True mast3b
XM_036977962.1 mRNA upstream 130905 58546384 ~ 58562388 (-) False LOC110524151
TU476443 other downstream 338 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 300421 58112387 ~ 58114060 (-) True G420193
TU475656 other downstream 708545 57699745 ~ 57705936 (-) True G419714
TU475533 other downstream 788307 57620054 ~ 57626174 (-) True LOC110524128
TU475541 other downstream 802914 57611059 ~ 57611567 (-) True G419603
TU477090 other upstream 610624 59026103 ~ 59036299 (-) True G420982
TU477230 other upstream 717391 59132870 ~ 59138257 (-) True lsg1
TU478587 other upstream 1685286 60100765 ~ 60101056 (-) True G422347
TU479791 other upstream 2643515 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 3201391 61616870 ~ 61617244 (-) True G424474

Expression Profile