RNA id: TU476459


Basic Information

Item Value
RNA id TU476459
length 389
lncRNA type intronic
GC content 0.37
exon number 1
gene id G420437
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58420086 ~ 58420474 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATTGCCATTGTTATGATATATTAACCTGGTGGGGGTTGATACTGTATCAAAACATTTATATAAGTACATCCAGCAAGAGTCGTACTGCAAAAGTCACTATTCCAAATCgagtcaaattgtatttgttacatgcttcgtaagcaacaggtgtagactaacagaaAAATGTTTACCCaccggcccttcccaacaatgcagagagaaataaaacagagaaataatagaaaagtatttgcgtaataatagatacacaatggttaacgataacttggctatatacacaaggtaccagtaccgagtcaatgtgcaagggGACAAAGTAATTGAGCTATATATGTACatttaactaggaataaagtgacagtagcagcagtgtatgtgacgAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476444 lncRNA downstream 4607 58414481 ~ 58415479 (-) True G420422
TU476442 lncRNA downstream 7077 58411333 ~ 58413009 (-) True G420420
TU476451 lncRNA downstream 19319 58400559 ~ 58400767 (-) True G420429
TU476426 lncRNA downstream 37430 58381358 ~ 58382656 (-) True LOC110524144
TU476388 lncRNA downstream 46108 58373269 ~ 58373978 (-) False G420369
TU476464 lncRNA upstream 35891 58456365 ~ 58456602 (-) True G420442
TU476489 lncRNA upstream 57313 58477787 ~ 58477998 (-) True G420466
TU476491 lncRNA upstream 57892 58478366 ~ 58478835 (-) True G420468
TU476832 lncRNA upstream 84601 58505075 ~ 58507002 (-) True G420763
TU476844 lncRNA upstream 101404 58521878 ~ 58522736 (-) True G420773
XM_036977959.1 mRNA downstream 10766 58379780 ~ 58409320 (-) False LOC110524144
XM_021603517.2 mRNA downstream 25290 58379780 ~ 58394796 (-) False LOC110524144
LOC118964716 mRNA downstream 40041 58377558 ~ 58380045 (-) True LOC118964716
XM_021603504.2 mRNA downstream 233037 58163918 ~ 58187049 (-) True LOC110524141
NM_001160660.1 mRNA downstream 300053 58115817 ~ 58120033 (-) True pgpi
XM_036977962.1 mRNA upstream 125910 58546384 ~ 58562388 (-) False LOC110524151
XM_021603536.2 mRNA upstream 125910 58546384 ~ 58567683 (-) False LOC110524151
XM_036977961.1 mRNA upstream 125910 58546384 ~ 58567683 (-) True LOC110524151
XM_021603537.2 mRNA upstream 152784 58573258 ~ 58578611 (-) True LOC110524152
XM_021603545.2 mRNA upstream 250997 58671471 ~ 58675928 (-) True LOC110524158
TU476443 other downstream 5943 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 306026 58112387 ~ 58114060 (-) True G420193
TU475656 other downstream 714150 57699745 ~ 57705936 (-) True G419714
TU475533 other downstream 793912 57620054 ~ 57626174 (-) True LOC110524128
TU475541 other downstream 808519 57611059 ~ 57611567 (-) True G419603
TU477090 other upstream 605629 59026103 ~ 59036299 (-) True G420982
TU477230 other upstream 712396 59132870 ~ 59138257 (-) True lsg1
TU478587 other upstream 1680291 60100765 ~ 60101056 (-) True G422347
TU479791 other upstream 2638520 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 3196396 61616870 ~ 61617244 (-) True G424474

Expression Profile