RNA id: TU476491


Basic Information

Item Value
RNA id TU476491
length 470
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G420468
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58478366 ~ 58478835 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAATACTGCATTGATTTTAttagggctcggttctaggcacTCTCCTCTTTTATCTATATACTAAGTCACtcggctctgtcatatcctcacatggtctctcctatctttgctttttaaaaattattttacccctttttgtcCCCAATTTTGTGTtatccatcgctgcaactccagaATGACTCAGGAGATGTGAAGGTCTAGAgctgtgcatcctccgaaacacaacccagccaagccgcactgcttcttgacacaatgcccgcttaacccggaagccagccgcaccaatgtgtcgaaggaaacaccgtacacctggcgaccgggTCAGcgtgccacaggagttgctagttcgcgatgggacaagaacatgggacaagaacatccctgccggccaaaccctcccctaaccctgatgactctgggccaattgtgtgctgccccatTGGTCTCCcatcgcggccggctgcgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476489 lncRNA downstream 368 58477787 ~ 58477998 (-) True G420466
TU476464 lncRNA downstream 21764 58456365 ~ 58456602 (-) True G420442
TU476459 lncRNA downstream 57892 58420086 ~ 58420474 (-) True G420437
TU476444 lncRNA downstream 62887 58414481 ~ 58415479 (-) True G420422
TU476442 lncRNA downstream 65357 58411333 ~ 58413009 (-) True G420420
TU476832 lncRNA upstream 26240 58505075 ~ 58507002 (-) True G420763
TU476844 lncRNA upstream 43043 58521878 ~ 58522736 (-) True G420773
TU476883 lncRNA upstream 123563 58602398 ~ 58602750 (-) True G420808
TU476885 lncRNA upstream 140618 58619453 ~ 58620031 (-) False G420809
TU476884 lncRNA upstream 140749 58619584 ~ 58620031 (-) True G420809
XM_021603518.2 mRNA downstream 3133 58416872 ~ 58475233 (-) False mast3b
XM_021603519.2 mRNA downstream 3133 58416872 ~ 58475233 (-) True mast3b
XM_021603520.2 mRNA downstream 3134 58416872 ~ 58475232 (-) False mast3b
XM_021603522.2 mRNA downstream 24267 58416872 ~ 58454099 (-) False mast3b
XM_036977959.1 mRNA downstream 69046 58379780 ~ 58409320 (-) False LOC110524144
XM_036977962.1 mRNA upstream 67549 58546384 ~ 58562388 (-) False LOC110524151
XM_021603536.2 mRNA upstream 67549 58546384 ~ 58567683 (-) False LOC110524151
XM_036977961.1 mRNA upstream 67549 58546384 ~ 58567683 (-) True LOC110524151
XM_021603537.2 mRNA upstream 94423 58573258 ~ 58578611 (-) True LOC110524152
XM_021603545.2 mRNA upstream 192636 58671471 ~ 58675928 (-) True LOC110524158
TU476443 other downstream 64223 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 364306 58112387 ~ 58114060 (-) True G420193
TU475656 other downstream 772430 57699745 ~ 57705936 (-) True G419714
TU475533 other downstream 852192 57620054 ~ 57626174 (-) True LOC110524128
TU475541 other downstream 866799 57611059 ~ 57611567 (-) True G419603
TU477090 other upstream 547268 59026103 ~ 59036299 (-) True G420982
TU477230 other upstream 654035 59132870 ~ 59138257 (-) True lsg1
TU478587 other upstream 1621930 60100765 ~ 60101056 (-) True G422347
TU479791 other upstream 2580159 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 3138035 61616870 ~ 61617244 (-) True G424474

Expression Profile