RNA id: TU476928


Basic Information

Item Value
RNA id TU476928
length 342
lncRNA type intronic
GC content 0.38
exon number 1
gene id G420844
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58685579 ~ 58685920 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCCATACcactttcaaaggcacttaaatctttggtcttgcccattcatgctctgaatggcacacacacacaatccatgtctcaattgtctccaggcttagaaaatccttctttaacctgtctcctcccattcatctacactgattgaagtagatttaacaagtgacatcaataagcgaccatagctttcacttggattcacctggtcagtctatatcatggaaatGTAAAAAGTCTTCAATAAACCTTCAAACACATGGCCCATTATATGCCATTGTAAATTATAACAAACCCAAGAGTTTACAGTGCTCCTAGGAAATTTACatgacacacatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476927 lncRNA downstream 1402 58683906 ~ 58684177 (-) True G420843
TU476921 lncRNA downstream 14982 58670050 ~ 58670597 (-) True G420837
TU476917 lncRNA downstream 20620 58664692 ~ 58664959 (-) True G420833
TU476916 lncRNA downstream 20922 58664438 ~ 58664657 (-) True G420832
TU476912 lncRNA downstream 26037 58659278 ~ 58659542 (-) True G420828
TU476930 lncRNA upstream 2642 58688562 ~ 58688785 (-) True G420846
TU476931 lncRNA upstream 3016 58688936 ~ 58689211 (-) True G420847
TU476935 lncRNA upstream 6297 58692217 ~ 58694635 (-) True G420850
TU476946 lncRNA upstream 22862 58708782 ~ 58709233 (-) True G420860
TU476968 lncRNA upstream 65256 58751176 ~ 58753528 (-) True G420879
XM_021603545.2 mRNA downstream 9651 58671471 ~ 58675928 (-) True LOC110524158
XM_021603537.2 mRNA downstream 106968 58573258 ~ 58578611 (-) True LOC110524152
XM_021603536.2 mRNA downstream 117896 58546384 ~ 58567683 (-) False LOC110524151
XM_036977961.1 mRNA downstream 117896 58546384 ~ 58567683 (-) True LOC110524151
XM_036977962.1 mRNA downstream 123191 58546384 ~ 58562388 (-) False LOC110524151
XR_005051820.1 mRNA upstream 148342 58834262 ~ 58836111 (-) True LOC110524167
XM_021603553.2 mRNA upstream 166099 58852019 ~ 58856447 (-) True gamt
XR_005051821.1 mRNA upstream 296768 58982688 ~ 59001580 (-) True LOC118964628
trnaa-ugc-13 mRNA upstream 340606 59026526 ~ 59026598 (-) True trnaa-ugc-13
XM_021603568.2 mRNA upstream 369200 59055120 ~ 59115105 (-) False atp13a3
TU476443 other downstream 271436 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 571519 58112387 ~ 58114060 (-) True G420193
TU475656 other downstream 979643 57699745 ~ 57705936 (-) True G419714
TU475533 other downstream 1059405 57620054 ~ 57626174 (-) True LOC110524128
TU475541 other downstream 1074012 57611059 ~ 57611567 (-) True G419603
TU477090 other upstream 340183 59026103 ~ 59036299 (-) True G420982
TU477230 other upstream 446950 59132870 ~ 59138257 (-) True lsg1
TU478587 other upstream 1414845 60100765 ~ 60101056 (-) True G422347
TU479791 other upstream 2373074 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 2930950 61616870 ~ 61617244 (-) True G424474

Expression Profile