RNA id: TU476946


Basic Information

Item Value
RNA id TU476946
length 452
lncRNA type antisense_over
GC content 0.47
exon number 1
gene id G420860
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58708782 ~ 58709233 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCAACCTGTTCATGTTTCCCGAGGAGTCAACATCATAATAGATGTCATTGTCTTCAGAACGGacaggaggtggtggtggtggcagtgaGGGGTCAGGCGCTCTGGACAGTTTGAGTTTACGTTTCACTTCCTCATAATCCACATCCACACACGTGCTAATGATGTAACCATCTGCAAAGCAACACTTCATTACTGGCTTTTGGTAGCTTTAGGTACACAACATGGGTGGTTTTCAACGTTGTCACAGCACATATCGAACTAGTATAAAATATGGAACAAATATGGGCTGTTTAGTTCTATGGAATTAAATAGTGTTTTACTCACAGGTGCCAGTCTGTGTGCGGGCTAGCCACCTGCCATCGGGGTTGTTCTTAACCCGTATGATCTCCACTCTGTTTCCCTGACGAACACTTAGATCATGCTTGCCCCCCTGCCAGTCGTGTCGAACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476935 lncRNA downstream 14147 58692217 ~ 58694635 (-) True G420850
TU476931 lncRNA downstream 19571 58688936 ~ 58689211 (-) True G420847
TU476930 lncRNA downstream 19997 58688562 ~ 58688785 (-) True G420846
TU476928 lncRNA downstream 22862 58685579 ~ 58685920 (-) True G420844
TU476927 lncRNA downstream 24605 58683906 ~ 58684177 (-) True G420843
TU476968 lncRNA upstream 41943 58751176 ~ 58753528 (-) True G420879
TU476983 lncRNA upstream 66748 58775981 ~ 58776677 (-) True G420894
TU477013 lncRNA upstream 99801 58809034 ~ 58828570 (-) True G420921
TU477016 lncRNA upstream 113342 58822575 ~ 58823502 (-) True G420924
TU477040 lncRNA upstream 132352 58841585 ~ 58842095 (-) True G420948
XM_021603545.2 mRNA downstream 32854 58671471 ~ 58675928 (-) True LOC110524158
XM_021603537.2 mRNA downstream 130171 58573258 ~ 58578611 (-) True LOC110524152
XM_021603536.2 mRNA downstream 141099 58546384 ~ 58567683 (-) False LOC110524151
XM_036977961.1 mRNA downstream 141099 58546384 ~ 58567683 (-) True LOC110524151
XM_036977962.1 mRNA downstream 146394 58546384 ~ 58562388 (-) False LOC110524151
XR_005051820.1 mRNA upstream 125029 58834262 ~ 58836111 (-) True LOC110524167
XM_021603553.2 mRNA upstream 142786 58852019 ~ 58856447 (-) True gamt
XR_005051821.1 mRNA upstream 273455 58982688 ~ 59001580 (-) True LOC118964628
trnaa-ugc-13 mRNA upstream 317293 59026526 ~ 59026598 (-) True trnaa-ugc-13
XM_021603568.2 mRNA upstream 345887 59055120 ~ 59115105 (-) False atp13a3
TU476443 other downstream 294639 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 594722 58112387 ~ 58114060 (-) True G420193
TU475656 other downstream 1002846 57699745 ~ 57705936 (-) True G419714
TU475533 other downstream 1082608 57620054 ~ 57626174 (-) True LOC110524128
TU475541 other downstream 1097215 57611059 ~ 57611567 (-) True G419603
TU477090 other upstream 316870 59026103 ~ 59036299 (-) True G420982
TU477230 other upstream 423637 59132870 ~ 59138257 (-) True lsg1
TU478587 other upstream 1391532 60100765 ~ 60101056 (-) True G422347
TU479791 other upstream 2349761 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 2907637 61616870 ~ 61617244 (-) True G424474

Expression Profile