RNA id: TU477025


Basic Information

Item Value
RNA id TU477025
length 1008
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G420933
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58877285 ~ 58878292 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTTTCGTACAAAATTCTCTTTAAAAAAATTGCAGTTTGTGTATAATATATATTCATATTTTCCAAACTTTAAAATAAAGACTCAGAAAATAAACACAATCCaccaaattaaaaacattttccctAAAATTTAAAGCTGAGAACTTTAGACCCTGTTTTCAGTTCTGTATCTGGCATAAATAtacatatgtctctctctctctctctatatatatagatatattctCTGTGCTAGTGTTTGACCAGACAATCAAAACCTATTGCAAAGTAGTAAAGTCCTACTTTAAAACATGTGGGGAGAAACAAAGTTCCTTTCATTTCAACATTTGAAAGAAAGGTTATGCAAAAATCAACTTTTACATCATGTGACATTGTAACAGAAGTAAATTGGAATCCCTGGTTTTATGAGAGTTCACTTTTCCCCCCAAATTGTGTCATTTTGTGTTCCAAAAAACAAACACAGAAATCCAGTTTTGCTTATGACCAGAACACATTTCCCTGACTTTAGAACTGAGCGCTGTGGCGGTCGGAGACGCTCAGCGTCGGTATGGATGAAAGCCCGTTACGTTGTGATTCTGTCCTCGAGCAAAAGCGGCTGCTGTCGGCTGGGGGCCCGCCACCGGTTGTGCTGTTGGTGCCCCGTATGAAGCGGTCTGCTGGCTGGGATCTGCGAAAGTATGGCCAAACCCACTCAGGTCCTGACCATAACCTGTGAGGGTGGGTGAAGAACAGGGAAGAAGGGTTCATTATCACAATCATAAATGGTGCTCATAAACAAACAGATTCCAACCAGCTAGGTGAAAGTCCCTTATTTTACCCAAAATAAATACAGCATTGATCATGGTTTCAGGGCTTCTAATGTTCATGTTAAATATTGTCTTCCATCCTTCATGAGCCTCCATGAACCAACATTCTGAGTTTGGTTAGCCAGTTGAGTGCTTCCAGTGTAAATCAATTGGTCTATTATTTTTAGGATTCAAAAGATGCAATCTGAACTGTTATGAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU477030 lncRNA downstream 1794 58874502 ~ 58875491 (-) True G420938
TU477029 lncRNA downstream 4150 58871647 ~ 58873135 (-) True G420937
TU477032 lncRNA downstream 5759 58870375 ~ 58871526 (-) True G420940
TU477024 lncRNA downstream 7058 58868818 ~ 58870227 (-) True G420932
TU477031 lncRNA downstream 8610 58867406 ~ 58868675 (-) True G420939
TU477046 lncRNA upstream 1905 58880197 ~ 58880430 (-) True G420953
TU477049 lncRNA upstream 4202 58882494 ~ 58882707 (-) True G420956
TU477056 lncRNA upstream 20145 58898437 ~ 58898885 (-) True G420963
TU477057 lncRNA upstream 20861 58899153 ~ 58902748 (-) False G420964
TU477058 lncRNA upstream 20861 58899153 ~ 58902748 (-) True G420964
XM_021603553.2 mRNA downstream 20838 58852019 ~ 58856447 (-) True gamt
XR_005051820.1 mRNA downstream 41174 58834262 ~ 58836111 (-) True LOC110524167
XM_021603545.2 mRNA downstream 201357 58671471 ~ 58675928 (-) True LOC110524158
XM_021603537.2 mRNA downstream 298674 58573258 ~ 58578611 (-) True LOC110524152
XM_036977961.1 mRNA downstream 309602 58546384 ~ 58567683 (-) True LOC110524151
XR_005051821.1 mRNA upstream 104396 58982688 ~ 59001580 (-) True LOC118964628
trnaa-ugc-13 mRNA upstream 148234 59026526 ~ 59026598 (-) True trnaa-ugc-13
XM_021603568.2 mRNA upstream 176828 59055120 ~ 59115105 (-) False atp13a3
XM_021603569.2 mRNA upstream 176828 59055120 ~ 59115105 (-) False atp13a3
XM_036977976.1 mRNA upstream 176828 59055120 ~ 59115105 (-) False atp13a3
TU476443 other downstream 463142 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 763225 58112387 ~ 58114060 (-) True G420193
TU475656 other downstream 1171349 57699745 ~ 57705936 (-) True G419714
TU475533 other downstream 1251111 57620054 ~ 57626174 (-) True LOC110524128
TU475541 other downstream 1265718 57611059 ~ 57611567 (-) True G419603
TU477090 other upstream 147811 59026103 ~ 59036299 (-) True G420982
TU477230 other upstream 254578 59132870 ~ 59138257 (-) True lsg1
TU478587 other upstream 1222473 60100765 ~ 60101056 (-) True G422347
TU479791 other upstream 2180702 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 2738578 61616870 ~ 61617244 (-) True G424474

Expression Profile