RNA id: TU477057


Basic Information

Item Value
RNA id TU477057
length 3309
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G420964
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58899153 ~ 58902748 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaatacagtgtagacattgttaatgttgtaaatgactattgtagctggaaacggcagacctttaatggaatatctacatactgtaggcgtacagaggcccattatcagcaaccatcactcctgtgttccaatggcacgtggtgttagctaatccaagttgatcatttcaaaaggataattgatcattagcaaacccttttgcaattatgttagcacagctggaaactgGTGGTACAAGCAGTGGCAGTGCGAGAAATAAGGTGAAGTTCAAGCTCAGACAATTGTGGTATTTTGAGGAAGCTGCATTTTTCAAAACAAGTGGTGACAGCTTTCGACACGCATTAGACACTTCTGGGTTTGTTTTGATAAGCCTAGTATGTAAAACATGAGAGGATGTTTATTTGTTCCAATCTATAGTTTTATGGTGTTCTGTTCCATCAATGGCACTTTTGACTAAACATTTGACTTGAAATACTGTAATGACAAGGTTTTAAACATATTGAAATATAGATTTATGTAGTTGCTCATGGCAATGGCCTATTATGCTTAAAAATCCAATATGTCAGTGAAAGGCAGCAGGCAATTTGACAGCATCTTTGGTTGtacgatcttaatttgatcaccctgtttttGTACATGAATCAAAAATCCTAATCTACTCCATCCTACGGCCATTATGGCCAAGGGTAAATGCGAATACACTTCAAAACCTGTTATTATGGGTTTAGCCATCGGACCTAACTAGTTGTACAGCACTCCAGCTGTGCATGATGAAAGACTTCTGGCACGTGATATCATCTTTACCTTTCACACACTGACCTGCAATTGAAAAACAGTAACAATAGTTTTTATTACTCTGCTAGAAATGTTGTAACTACCTTATATATCTAGTTTGGATTATTTGTCTTTGAAACAAACtatttttttgcaaaaaacaaagtgatcaaattaagatcatacaaCTGTACAACCAAAGATGCTGTCAAATTGCCTGGTGGTCAAGTCATAGGTGGATCAAGGTTCATTAGACCTTCAGTATAAGAATATTCAACTTTTTTGTACAATATTGTACAAACAATACTGAGGTTGTGAGGTCAAATTCAGAACTTCTTTTGCCAATTTGTTAGCAGAATTATCACACATGTTATTATTCATAATAACATTTGCCTTTTGTGTGGCGATCCTGCAGGAACATCCCTTTCACTAAGGATCAATGTCATATTTCACTGTTTTAGTGGTACTTTTTCAGTCAAACTGACTGATGCATTATAGCACTTACACCCTTTGAAAGGGTCCAACTGTTGTGAAATTTTTCATATTTAGTCTGTGGTAAAAATGTGAGTTACTGAATGTCATATCGTCATCTATACCTTCAATAGTAATAAATGCTTTGAATGTATAACACAAACTAAATATCTTAAATAAAATATCATTGCGAGTTGTATTTGAAATGGTTGATTGTTTGGGTGAAATTGGGCCTTAGAAAGTTCTTAGAAAATCGATTGTGACTTATTTTGTCTGGATGCTGCAGGTTCATATAGTTGTACTCTGTACAGTatcataaacaaacatacagctcCCCCTAGTGAAATAACTGATAATACACAACTACACtcaccggacagtttattaggtacacccatctagtaccgagTCGGACTCTCCTTAcatccagaacagcctgaattctttggggcGTGGATTCTACAAATTGGGTGCTGACACGATGGCATCacacagttgctgcagattggacagcAGTACACCAcagccaccagcctgtaccatcGACACAAGGTAGGATGGGTCGATCATGCTTTCACCAAATCCTAAGTCTGCCATCAGCTTGACGCAACAAGAACCAAGATTCATCGGACCAGGCAATGCTTTTCCACTCAATtctccagtgttggtgatcgcattCCCAATGGAGTCGTTTTTtccttgtttttagctgataggagtggaacccagtgtgtcgtctgctgcaatagctcatccgtgacaaggatcgaCGAGTTGTACTGAgccattatttgtctgtttgtggcccgcctgttatcTTGCACAATTTTTCTTGAACCTCtcattctccttcaacctctcatcgacgagctgttttcgccccaggactgccactgactggatcatttctgtttgtcgcaccattctctgtaaaccctagacacggTCGTGCGCAAAAGCCCAGGACCGAGGCCGTTTCTGAGATGGCGTGCCTGGCACTGAccatcataccacgctcaaagtcgcttCGGTCACTGTTTTTTtcccattctaatgttcaatcgaACGGTAACTGAATGCCCCGATGCCCGTCTGCCTACTTTaaatagcaagccacggccacgtgactcactgtctgtaggagctatCCATTTTTGTGAACGGGGTACCGACGGGGTGCCAGTGAAAGGTTTCAAAGCATGAGTTGCTACATTGACACTATTCATAAATAAACAGTTGTAGGTAGTAGTGCGTGGTTTCACGCCGCAGTGGTCAGGCTATTTTGCTCACCACACAAAACCGTGTAATCCACCATGACGCAAGACAGCATAGTCTAAAGTATTAACAAACAAGAAGAACAAAAATGGGGATAAGTGCATACGTGTATGTGTTAGCAATGCTTGTGTGTCATCACCAGGTGCAGTCTTAAGCCACTGACGGGAGAAGAAACAAAGACACATTTGGTAGTGAGAGTTCCTGAGGAGGAGTTTTGGTAGTGAGAGTTCCTGAGGAGGAGTTTTGGTAGTGAGAGTTCCTGAGGAGGAGTTTTGGTAGTGAGAGTTCCTGAGGAGGAGTTTTGCTAATGAGAGTTCCTGAGGAGGAGTTTTGGTAGTGAGAGTTCCTGAGGAGGAGTTTTGGTAGTGAGAGTTCCTGAGGAGGAGTTTTGGTAGTGAGAGTTCCTGAGGAGGAGTTTTGGTAGTGAGAGTTCATGGGGTGGAGTTTTGCTAACAGGGTGTGGCACAAAAATCCCAAATAAAACACCAAATCACTCCTAGATGCTGAAAGCCTGTTTCTCAAAATGCTCCGCTTTTTTCACTCTTCTCCTTCTTTACAGCCATTGTCCAGTTAAAAACTGATAGGCGACACATTTCTGCTCTCGGCCTgggcgcgggggggggggggcgggggtgaCATTGGGCaatggggggaggagaggtgggctCTTTCCGTTCAACTGCAGCCCTCATCAGAGGTACTGCTGGAGGAAGTGCAGCAGCATAATCTCATAGTACTCTCCAGACTTTGGGCAGCGGATGCTGTGTCTCTCGTCGGGGTAGATCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU477056 lncRNA downstream 268 58898437 ~ 58898885 (-) True G420963
TU477049 lncRNA downstream 16446 58882494 ~ 58882707 (-) True G420956
TU477046 lncRNA downstream 18723 58880197 ~ 58880430 (-) True G420953
TU477025 lncRNA downstream 20861 58877285 ~ 58878292 (-) True G420933
TU477030 lncRNA downstream 23662 58874502 ~ 58875491 (-) True G420938
TU477062 lncRNA upstream 4315 58907063 ~ 58907344 (-) True G420968
TU477101 lncRNA upstream 47009 58949757 ~ 58949993 (-) True G420992
TU477148 lncRNA upstream 142622 59045370 ~ 59045647 (-) True G421034
TU477087 lncRNA upstream 144957 59047705 ~ 59053737 (-) True G420981
TU477191 lncRNA upstream 218312 59121060 ~ 59121285 (-) True G421077
XM_021603553.2 mRNA downstream 42706 58852019 ~ 58856447 (-) True gamt
XR_005051820.1 mRNA downstream 63042 58834262 ~ 58836111 (-) True LOC110524167
XM_021603545.2 mRNA downstream 223225 58671471 ~ 58675928 (-) True LOC110524158
XM_021603537.2 mRNA downstream 320542 58573258 ~ 58578611 (-) True LOC110524152
XM_036977961.1 mRNA downstream 331470 58546384 ~ 58567683 (-) True LOC110524151
XR_005051821.1 mRNA upstream 79940 58982688 ~ 59001580 (-) True LOC118964628
trnaa-ugc-13 mRNA upstream 123778 59026526 ~ 59026598 (-) True trnaa-ugc-13
XM_021603568.2 mRNA upstream 152372 59055120 ~ 59115105 (-) False atp13a3
XM_021603569.2 mRNA upstream 152372 59055120 ~ 59115105 (-) False atp13a3
XM_036977976.1 mRNA upstream 152372 59055120 ~ 59115105 (-) False atp13a3
TU476443 other downstream 485010 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 785093 58112387 ~ 58114060 (-) True G420193
TU475656 other downstream 1193217 57699745 ~ 57705936 (-) True G419714
TU475533 other downstream 1272979 57620054 ~ 57626174 (-) True LOC110524128
TU475541 other downstream 1287586 57611059 ~ 57611567 (-) True G419603
TU477090 other upstream 123355 59026103 ~ 59036299 (-) True G420982
TU477230 other upstream 230122 59132870 ~ 59138257 (-) True lsg1
TU478587 other upstream 1198017 60100765 ~ 60101056 (-) True G422347
TU479791 other upstream 2156246 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 2714122 61616870 ~ 61617244 (-) True G424474

Expression Profile