RNA id: TU477193


Basic Information

Item Value
RNA id TU477193
length 287
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G421079
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59121749 ~ 59122035 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcagagaaaccactactaaagggtaacaataagaagaagagacttgcttgggacaagaaacatgagcaatggacattagaccggtggaaatctgtcctttggtctgatgggtccaaatgtttgatttttggttccaaccaccgtgtctttgtgagacgcagagtaagtgaacggattatctctgcatgtgtggttcccaccgtgaagcatggaggagtgatggtgtgggggtacttgctggtgacactcagtgatttattttagatttcaaggcacacttaaccagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU477191 lncRNA downstream 464 59121060 ~ 59121285 (-) True G421077
TU477087 lncRNA downstream 68012 59047705 ~ 59053737 (-) True G420981
TU477148 lncRNA downstream 76102 59045370 ~ 59045647 (-) True G421034
TU477101 lncRNA downstream 171756 58949757 ~ 58949993 (-) True G420992
TU477062 lncRNA downstream 214405 58907063 ~ 58907344 (-) True G420968
TU477256 lncRNA upstream 44338 59166373 ~ 59166782 (-) True G421137
TU477257 lncRNA upstream 44878 59166913 ~ 59169292 (-) True G421138
TU477260 lncRNA upstream 50091 59172126 ~ 59172338 (-) True G421141
TU477263 lncRNA upstream 51579 59173614 ~ 59173934 (-) True G421144
TU478132 lncRNA upstream 228811 59350846 ~ 59352325 (-) True G421935
XM_021603568.2 mRNA downstream 6644 59055120 ~ 59115105 (-) False atp13a3
XM_021603569.2 mRNA downstream 6644 59055120 ~ 59115105 (-) False atp13a3
XM_036977976.1 mRNA downstream 6644 59055120 ~ 59115105 (-) False atp13a3
XM_036977977.1 mRNA downstream 6644 59055120 ~ 59115105 (-) True atp13a3
trnaa-ugc-13 mRNA downstream 95151 59026526 ~ 59026598 (-) True trnaa-ugc-13
XM_021603572.2 mRNA upstream 3046 59125081 ~ 59131011 (-) False tmem44
XM_021603573.2 mRNA upstream 3046 59125081 ~ 59131011 (-) True tmem44
XM_021603571.2 mRNA upstream 9117 59131152 ~ 59138429 (-) False lsg1
XM_036977978.1 mRNA upstream 237851 59359886 ~ 59448197 (-) True LOC110524182
XM_021603592.2 mRNA upstream 346745 59468780 ~ 59563672 (-) False LOC110524184
TU477090 other downstream 85450 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 707606 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 1007689 58112387 ~ 58114060 (-) True G420193
TU475656 other downstream 1415813 57699745 ~ 57705936 (-) True G419714
TU475533 other downstream 1495575 57620054 ~ 57626174 (-) True LOC110524128
TU477230 other upstream 10835 59132870 ~ 59138257 (-) True lsg1
TU478587 other upstream 978730 60100765 ~ 60101056 (-) True G422347
TU479791 other upstream 1936959 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 2494835 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 2527932 61649967 ~ 61651775 (-) True G424499

Expression Profile