RNA id: TU478355



Basic Information


Item Value
RNA id TU478355
length 226
lncRNA type antisense_over
GC content 0.52
exon number 1
gene id G422139
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59741404 ~ 59741629 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCTTGACTCTGTTGGGATAGGTAAGGTTGGCGTCAGCCCGCCTGCACTGCCCATTGAGTCCCATTTCACTGTGGTGGGCCCTGAGTCCATTGTGAAGCCAGAGGTTGAGATGAGGGTTGCTGTGTTGAAAGCCTCTGTGCTCCCCAGGCACTCTGGTGTCTGAGAACATGATAGAAGCAGTCCAGCAAGCAGTCACAGAGGAAGACTCCTTAAAGAATGAGCTTTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU478354 lncRNA downstream 856 59740282 ~ 59740548 (-) True G422138
TU478339 lncRNA downstream 6945 59732059 ~ 59734459 (-) False G422125
TU478332 lncRNA downstream 6945 59732216 ~ 59734459 (-) True G422125
TU478336 lncRNA downstream 9613 59718709 ~ 59731791 (-) False G422125
TU478293 lncRNA downstream 75516 59664718 ~ 59665888 (-) True G422089
TU478371 lncRNA upstream 19321 59760950 ~ 59761159 (-) True G422155
TU478373 lncRNA upstream 20544 59762173 ~ 59762438 (-) True G422157
TU478410 lncRNA upstream 81794 59823423 ~ 59823649 (-) True G422191
TU478413 lncRNA upstream 83076 59824705 ~ 59825043 (-) True G422194
TU478419 lncRNA upstream 100282 59841911 ~ 59842034 (-) True G422200
XM_021603603.2 mRNA downstream 27303 59710615 ~ 59714101 (-) True cope
XM_021603601.2 mRNA downstream 31712 59665915 ~ 59709692 (-) True LOC110524188
XM_021603602.2 mRNA downstream 31717 59665915 ~ 59709687 (-) False LOC110524188
XR_005051822.1 mRNA downstream 129366 59608382 ~ 59612038 (-) True LOC118964629
XM_021603586.2 mRNA downstream 177728 59468780 ~ 59563676 (-) True LOC110524184
XM_021603608.2 mRNA upstream 3847 59745476 ~ 59754819 (-) True LOC110524192
XM_021603609.2 mRNA upstream 31132 59772761 ~ 59776655 (-) False LOC110524193
XM_021603610.2 mRNA upstream 31132 59772761 ~ 59776656 (-) True LOC110524193
XM_021603612.2 mRNA upstream 46115 59787744 ~ 59797770 (-) False LOC110524194
XM_021603614.2 mRNA upstream 46115 59787744 ~ 59797771 (-) False LOC110524194
TU477230 other downstream 603147 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 705105 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 1327261 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 1627344 58112387 ~ 58114060 (-) True G420193
TU475656 other downstream 2035468 57699745 ~ 57705936 (-) True G419714
TU478587 other upstream 359136 60100765 ~ 60101056 (-) True G422347
TU479791 other upstream 1317365 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 1875241 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 1908338 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 1917404 61659033 ~ 61659585 (-) True G424502

Expression Profile