RNA id: TU478485


Basic Information

Item Value
RNA id TU478485
length 2402
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G422255
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59928035 ~ 59930514 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCTGAAATAATAACCTTAAATAAACCTTCAAGTGGTGCATTTAAGTCTAAAACCCTTTTGCTTTATTGTAGTTTCAAagaaaacaaaagaaaacaaaaaaactaaaagtTAGATGCTGAAATCATCACTCCTGTGGTTCCACAGCATGCCATAGCTCAGCTAGAGCCTCTGTTATAAACTCATGCAATTAACCAACCCTACATATCTCAGAGCAACAGTCTTCACATTAAAGTGCTTCCTTTTGCAAAAGCAGAAATCAACTCCATGTACAGTCAGAAACTCTGCTGGGTCAATCTTTCCCATCTACACACAAGAGAAAAATAAAAAGCCAAGGCCAGTTTTGTGGGATGTTTACTTGTTTTCTTTTGGCTTATAGGACGTCCAGAACTTACCTTCACTCTAGCACCTTTTATGAGATGGGTGTTTACTGTTGATAGGCAACATAAATCCTATAGCACTCATCTATGCAAAAACAAAAATACATATTGACTAACGATAGACCTTTGAAAGCTGTACATGACTTTGCACAAACAAACAATTACTCTTCAACAAAATGAGACAAACCACGAGGCATGAAGGAGCAATTACATGGTTAAAAAAACTTGCAGCATGATTTCTTTTGATATAATACATTAAGGATCAGGGgcaatcaaaacacacacacaaaaaaagtgtcCAGAGAGAGCAGAATCTTGTTATATACTTAAAGTGATTATAAAATAATATTAAGGACATGGCTCAATTGACTTTCAGCTTTAACTAACCTTCAACTGTTGAGCAATGATATcgaagaaaaaacaacaactatgTGGCTAAAACTTCCTTTTGTAAAATCATTTGGTACCTTGAAACTACACATCTGGAACCAAATCCAAATATTCCCTACCATCTACCATGTCTCATTTTACAGTGTAATAATATTTGAATACGATGACACATCAATCACAGAACATCCTTCTCTTCTACAAAGAAATGTTTCCTTTGTAACAGTCAAATAAAGTGACAAAGCAACTCTCCAACATTAATAGGACACTTCACGGGCAAAACATCCCAGTTCCCTTTGTCTGACGAAGACAAACATATTGGAAAGGTTGGACAGTAATGATCAGCTGAGAGAAATAAGAAGCTTCTGCATATGTGCGGAATTCTCTTCTTTACGTACAGTCTCCGCTCTACTCATAGAGAACAGGCTGCTCTGCTCTGGTGAACGGGGCTTTATTACTAcagttagatcaaagctgaatcaatgtctgcaACATCACATAATGATAGTGTTCAACATAACAGGGCCAAATATAATAGCATAGTATAACGTTACTGTAAGACAAGACAAAAAACACCTAATTCCGTATGAGATTTTAAGATGATTGTGTGAAGGGTCGGATTTTTCTCTCATGTGGCCAAAACACAAGTGTGCTCCACTTGGCATTATATTTGCTTTGATTGAAACTAAGTACCGTCTGCTCTAAAAGTCAATCACTGTACATAATTCTAAACAACACGGTATAAGAAGATCTAAATGCatatccccatgaaactgattgagatcacAAGGTTGGTATGCAGATTCTGCATGGGCATTTCACCGGTAAAAATGAAAGAATTATCATTCACGATGGACAGTGAGAaatgtgaagggggggggggttctgtatTAAAAGAGCAGAGActgtgagtagagtagagaatcACACACATGCGCAGAAGCTTCGGGACCTTTAGCTGTCAGAACGGAGGGTCGAGAAATGTCGGATTCGCAGCCTCGGCCTAGAAAACAAACAACACATTTGAGATCCGTGGCCATTTTGCTGGTTTTGTCATTTTATCACAGGACACTCAAGTATATTTTCCCAGGAGATGAGGCTCACATTACAAATATGAATCAACCAGCTAATGTATGCTTGGCGTTTTATTTGCGAGGGGTTGAAAAGCAATATATGGTGAGGGCAAGCTGCCCACTGTAACTCTATAGATGGATACGGCACAAGGagcagtaatagcagcagtgagagagagagagagagagagagagagagagagagagagagagagagagagagggagagagagagagagagagagagagagagagagagaccacggaGATCTAACACTCAGAATGGAGAAGGCCTAGCTGACAGTAACAACACATCACGTCTTTGTCCAATGAAAAGCATCCGGGAAGACCAGTCACTTTGGGTAACTTTTTCCACTCCTTCCTTCAAAAGCACATTCTGGAGCACTATTACTCATTCTCTAGCCCTCCATTCTTCCCCTTCATGCCAAGGCAGGCACGTTCACTCGTCATCAAATGTTTGTTGGAGCAGAAAATTGGCAGCTAGATTCTCGTTCTTCTCACATGCAAAATATGCTTGAATGACAAGTCCCTCTGGAAATCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU478482 lncRNA downstream 5401 59922186 ~ 59922634 (-) True G422254
TU478429 lncRNA downstream 8584 59880825 ~ 59919451 (-) False G422207
TU478516 lncRNA upstream 69652 60000166 ~ 60000436 (-) True G422286
TU478524 lncRNA upstream 84353 60014867 ~ 60015099 (-) True G422294
TU478570 lncRNA upstream 150181 60080695 ~ 60085314 (-) False G422335
TU478575 lncRNA upstream 151773 60082287 ~ 60084578 (-) True G422335
TU478582 lncRNA upstream 164012 60094526 ~ 60094803 (-) True G422342
XR_005051823.1 mRNA downstream 13759 59904845 ~ 59914276 (-) False LOC118964630
XM_021603611.2 mRNA downstream 126831 59787744 ~ 59801204 (-) True LOC110524194
XM_021603614.2 mRNA downstream 130264 59787744 ~ 59797771 (-) False LOC110524194
XM_021603612.2 mRNA downstream 130265 59787744 ~ 59797770 (-) False LOC110524194
XM_021603610.2 mRNA downstream 151379 59772761 ~ 59776656 (-) True LOC110524193
XM_021603643.2 mRNA upstream 48493 59979007 ~ 59981619 (-) True klf2a
XM_021603647.2 mRNA upstream 186016 60116530 ~ 60134272 (-) True LOC110524206
XM_021603652.2 mRNA upstream 351860 60282374 ~ 60289431 (-) True LOC110524209
NM_001124604.1 mRNA upstream 367690 60298204 ~ 60306640 (-) True lpl
XM_021603661.2 mRNA upstream 464510 60395024 ~ 60398861 (-) False LOC110524214
TU477230 other downstream 789778 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 891736 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 1513892 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 1813975 58112387 ~ 58114060 (-) True G420193
TU475656 other downstream 2222099 57699745 ~ 57705936 (-) True G419714
TU478587 other upstream 170251 60100765 ~ 60101056 (-) True G422347
TU479791 other upstream 1128480 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 1686356 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 1719453 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 1728519 61659033 ~ 61659585 (-) True G424502

Expression Profile