RNA id: TU478524



Basic Information


Item Value
RNA id TU478524
length 233
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G422294
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60014867 ~ 60015099 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agtgtacacaaACATtaaaggacacctgctctttccatgacaaagactgaccaggtgaatccaggtgaaagttatgatcacttattgatatcacttgttaaatccacttcaatcagtgtagaggaagaggaggaggcaggttaaagaaggatttttaagccttgagacaattgagacatgaattgtgtatgtgtgccattcagaaggtgaatgggcaagtcaAAAcatataag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU478516 lncRNA downstream 14431 60000166 ~ 60000436 (-) True G422286
TU478484 lncRNA downstream 84353 59928035 ~ 59930514 (-) False G422255
TU478485 lncRNA downstream 84353 59928035 ~ 59930514 (-) True G422255
TU478482 lncRNA downstream 92233 59922186 ~ 59922634 (-) True G422254
TU478426 lncRNA downstream 95416 59919015 ~ 59919451 (-) True G422207
TU478570 lncRNA upstream 65596 60080695 ~ 60085314 (-) False G422335
TU478575 lncRNA upstream 67188 60082287 ~ 60084578 (-) True G422335
TU478582 lncRNA upstream 79427 60094526 ~ 60094803 (-) True G422342
TU478586 lncRNA upstream 85037 60100136 ~ 60100372 (-) True G422346
TU478596 lncRNA upstream 94772 60109871 ~ 60110102 (-) True G422356
XM_021603643.2 mRNA downstream 33248 59979007 ~ 59981619 (-) True klf2a
XR_005051823.1 mRNA downstream 100591 59904845 ~ 59914276 (-) False LOC118964630
XM_021603611.2 mRNA downstream 213663 59787744 ~ 59801204 (-) True LOC110524194
XM_021603614.2 mRNA downstream 217096 59787744 ~ 59797771 (-) False LOC110524194
XM_021603612.2 mRNA downstream 217097 59787744 ~ 59797770 (-) False LOC110524194
XM_021603647.2 mRNA upstream 101431 60116530 ~ 60134272 (-) True LOC110524206
XM_021603652.2 mRNA upstream 267275 60282374 ~ 60289431 (-) True LOC110524209
NM_001124604.1 mRNA upstream 283105 60298204 ~ 60306640 (-) True lpl
XM_021603661.2 mRNA upstream 379925 60395024 ~ 60398861 (-) False LOC110524214
XM_021603660.2 mRNA upstream 380495 60395594 ~ 60398862 (-) False LOC110524214
TU477230 other downstream 876610 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 978568 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 1600724 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 1900807 58112387 ~ 58114060 (-) True G420193
TU475656 other downstream 2308931 57699745 ~ 57705936 (-) True G419714
TU478587 other upstream 85666 60100765 ~ 60101056 (-) True G422347
TU479791 other upstream 1043895 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 1601771 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 1634868 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 1643934 61659033 ~ 61659585 (-) True G424502

Expression Profile