RNA id: TU478608


Basic Information

Item Value
RNA id TU478608
length 1728
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G422365
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60180660 ~ 60182387 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCACCAGCGAGCAACAGTAACAACCTTAGTAAAtcgaatcaaactttatttgtcacatgagccaaatacaagtgtagaccttaccgtgaaatgcttacttacaagcccttaaaacttcttcaggattggtgggtcccctgcgggacagttgagctaacgtagcctaatgcaattagcatgaggttgtaagtaacaagaacatttcccaggacatagacatatctgatactggcagaaagcttaatttcttgttaatctaactgcactgtccaatttactgtAGCTATTACCGTGAAATAATAGCATGCTATTTTTGAGGAGAGTACACAGTTTTGAACataaaaagttattaataaacaaattaggcacatttgggcagtcttgatacaaactttgaacagaaatgcaatggttcattggatcagtctaaaactttgcgcgcacactgctgccatctagtgggcaatatctaaattgcgcctgggctgcaataatacattatggcctttctctatTTCAAATATGACAgtacaaacaaatacaaaaatacattttttttcctttgtattatattttaccagatctaatgtgttatattctcctacattcctttcacatttccacaaacttcaaagtgtttcctttcaaatggtacttgcttcagggcctgagatacaggtagttagatttgggtatgtcatctTAGGCGAAAACTGAAAAAAGGGGCCGAtcctttaaccaacagtgcagttaagaaaatatttaccaaataaactaaagtaaagaaataataaaaagtaaaaagtaatagttcgttggtgatgtggacaccaagaaacttgaaactctcgacccgtctagagccctgtcgatgttaatgggggcatgTTTGGCCTGCATATTCCtgtagctcctttgtcttgctcacattgagggagaggttgttgtcctggcaccacactgcccgttctctgacctccctataggctgtctcatcattttcggtgaccaggcctaccactgttgtgtcggcAGCAAACtgttgttggagtcgtgttttGTCTGATCGTTAACTGGGCTGGCAGAATGGATTGTGTGAAGCGCAGGGACACCTATGAAGAAATGTTGAAGTCTTACTCTCAGATCTGCAAGGACTACCATGTCAAAGGTTTGGGCCACTTGGTGTATTATGACACGCAGAAATAGCACCAAAATTGGCTACAATAATGTAGGCCACCAAATATGAATTAGTGATTTTAcctataaaatgtgcagttttgaggtagagtgtaattggcatgctgactgcaggaatgtccaccagagctgttgcaatataattgaatgttaaatgttctaccataaactgcctcccaCTGTCgatttagagaatttgtcagtacgtccaaccggcaaAACAACGTAtaacgtcagcccaggacctccacattcggcttTTTGACCTGTGGGGGTGGGCCAGGCTCCCCAATTGGTGGGCCTAGCTGCCAAGTGGAAGGCCCATGTTCTCCAAGGCCCACCATGGCtgagcccctgcccagtcatgtgaaacccacagattagggcctaattgattgatttccttaaatTAATTGAGtaaattattttacatttttgcatgttgcgtttgaattttagttcagtatagctggctagctagtgaAAGAATAAAAAGCTAGTTTGGTAAATAATCATAGTTTGACTGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU478627 lncRNA downstream 29969 60150382 ~ 60150691 (-) True G422384
TU478606 lncRNA downstream 45070 60134816 ~ 60135590 (-) True G422363
TU478600 lncRNA downstream 67087 60112935 ~ 60113573 (-) True G422360
TU478599 lncRNA downstream 68824 60111620 ~ 60111836 (-) True G422359
TU478597 lncRNA downstream 69686 60110676 ~ 60110974 (-) True G422357
TU478631 lncRNA upstream 237 60182624 ~ 60182860 (-) True G422388
TU478659 lncRNA upstream 34984 60217371 ~ 60217664 (-) True G422415
TU478662 lncRNA upstream 37505 60219892 ~ 60220214 (-) True G422418
TU478713 lncRNA upstream 96545 60278932 ~ 60279141 (-) True G422466
TU478715 lncRNA upstream 97741 60280128 ~ 60280446 (-) True G422468
XM_021603647.2 mRNA downstream 46388 60116530 ~ 60134272 (-) True LOC110524206
XM_021603643.2 mRNA downstream 199041 59979007 ~ 59981619 (-) True klf2a
XR_005051823.1 mRNA downstream 266384 59904845 ~ 59914276 (-) False LOC118964630
XM_021603611.2 mRNA downstream 379456 59787744 ~ 59801204 (-) True LOC110524194
XM_021603614.2 mRNA downstream 382889 59787744 ~ 59797771 (-) False LOC110524194
XM_021603652.2 mRNA upstream 99987 60282374 ~ 60289431 (-) True LOC110524209
NM_001124604.1 mRNA upstream 115817 60298204 ~ 60306640 (-) True lpl
XM_021603661.2 mRNA upstream 212637 60395024 ~ 60398861 (-) False LOC110524214
XM_021603660.2 mRNA upstream 213207 60395594 ~ 60398862 (-) False LOC110524214
XR_005051825.1 mRNA upstream 231776 60414163 ~ 60426534 (-) True LOC118964632
TU478587 other downstream 79604 60100765 ~ 60101056 (-) True G422347
TU477230 other downstream 1042403 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 1144361 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 1766517 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 2066600 58112387 ~ 58114060 (-) True G420193
TU479791 other upstream 876607 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 1434483 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 1467580 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 1476646 61659033 ~ 61659585 (-) True G424502
TU481096 other upstream 1705811 61888198 ~ 61927422 (-) False G424649

Expression Profile