RNA id: TU478046


Basic Information

Item Value
RNA id TU478046
length 1264
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G421867
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60297185 ~ 60298566 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATGTTTTCACTTTATTAAAGTATCACATTCTGTCTTCATAGAGCACACTGCATTTCAGTTCAGAAAAATAAATGCGCTCATCAGCCGGCATGGAGACCAATTTGATCAGTCTGTCCAAAGCCACTCACATAAAATCACACCGCTTCATCTAGAAAAACAGCGACATCTATGGAAATCTGCCCAAATATATTACAGCttaaatatacaaatatatacaggtacattcaataaatataatattaaacattcTTGGGATGTTTATGGTTATTATGTAGGGCTACCCACCCATGTTGGCAAAGTCTCACATATATGTTATACATTTAGTGTAGCATTTTGTTTGATCTTTTTAAAGAAAATGGAATGTTTTAGAGGGCATGCTTGACCAATAGGGTTAAGGTAATTGTTTCTACGTGATTTTTGACCTATAAAGGAAGTAATAGAAGTACTAAGGCCATACTAACTACTCCTTGTGACCTCTATTCTTCAGAAGTCCAGTGGCCAATTAAAGAATGATCCGAACATAATCCATTTCAACTAGTTGATGAATGATCGAATTGACTGGACTAACGGCCTTAAAGTGACCAGTGCCAAACTCAATAACTAAATGCACACAAAGAACAAGCAGGGAATTCATCTACAATGATaacgcatatatatatatatataatagtgATTGAAAAGCTATTTACACGGGTCACTGCAATATTCAATTCAGTGAACAATGTCACCATCTTTGGTCCCTGTGATGGCGGCAATTAGTGGTTTAGGCATGACATTAGTGACATGATTATTATAGTGTGCACACTGAATGTGGCAAAAAATAAGTGGAAGCTATGTCAATCTCTTTGAATCGGAACTACCTAGTATGGCGTTAGGAATTAATTTATTTGATTTAGTAGGTATACATAAACACAGTTGAGATGAAAGGATTAAAAAGATAATGTAGCAACGTAAGACCAAGtcaaaatcattaaaaaaaaagcaATTGTAATACTCTCCATGATGAAGGTTAATAGAAGAAAAAGCACGTTAGCCGACACCCAGCACAGTGGGATGAAGTGATTGCGGGTGGAGATGAGATGACACAGGTTGGGAGGCAGAACATACAGCACAGGTCAGAGACTAACATCCCCTATCTCCTCTCCAGTGTATTCTCCCAGGCTCCATCAAGCTTTGGCTGTGTGGTTCAGTGTGCACTCTACTCAAGTGTTGCTTCATGCAATGTTATTCTTGAAGTGGCTTCCCTGCATCTTGAGTCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU478039 lncRNA upstream 86430 60210506 ~ 60210755 (+) True G421862
TU478038 lncRNA upstream 86972 60209935 ~ 60210213 (+) True G421861
TU478023 lncRNA upstream 100838 60196059 ~ 60196347 (+) True G421846
TU478021 lncRNA upstream 102401 60194223 ~ 60194784 (+) True G421844
TU478020 lncRNA upstream 103429 60193356 ~ 60193756 (+) True G421843
TU478748 lncRNA downstream 24091 60322657 ~ 60322919 (+) True G422500
TU478762 lncRNA downstream 32612 60331178 ~ 60418412 (+) True G422514
TU478812 lncRNA downstream 122865 60421431 ~ 60421644 (+) True G422561
TU478813 lncRNA downstream 123590 60422156 ~ 60422600 (+) True G422562
TU478814 lncRNA downstream 124984 60423550 ~ 60423839 (+) True G422563
XR_005051588.1 mRNA upstream 29338 60223797 ~ 60267847 (+) True LOC118964531
XM_021603650.2 mRNA upstream 116911 60165608 ~ 60180274 (+) False LOC110524208
XM_021603651.2 mRNA upstream 116911 60165608 ~ 60180274 (+) True LOC110524208
XM_021603645.2 mRNA upstream 135251 60153246 ~ 60161934 (+) False malt2
XM_036977996.1 mRNA downstream 69825 60368391 ~ 60395165 (+) False LOC110524211
XM_036977995.1 mRNA downstream 69827 60368393 ~ 60393191 (+) False LOC110524211
XM_036977998.1 mRNA downstream 78023 60376589 ~ 60395175 (+) False LOC110524211
XM_036977997.1 mRNA downstream 78024 60376590 ~ 60393191 (+) True LOC110524211
XM_021603659.2 mRNA downstream 100424 60398990 ~ 60407448 (+) True LOC110524213
TU476694 other upstream 1352968 58942728 ~ 58944217 (+) True G420634
TU476101 other upstream 1880409 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 2397537 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 2929848 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 3339020 56943838 ~ 56958165 (+) True LOC100135807
TU478964 other downstream 395691 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 1422971 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 1806957 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 1984586 62283152 ~ 62306937 (+) False LOC110524265
TU481721 other downstream 2746524 63045090 ~ 63051530 (+) True G425224

Expression Profile