RNA id: TU478878


Basic Information

Item Value
RNA id TU478878
length 3676
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G422618
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60509684 ~ 60573995 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGTTATCATTTTTTGCTTTATTACAAATGTGAAGTTATACAAATATTGCTTTTAACACATAGTACTGATAGAAAAATATACTATacatacaaagtatgtggacaccctttcaaagtGGATTCgtctatttcaaccacacctgttgctgacaagtgtataaaatggagcacacagccatgcaatctccaaagacaaacgttggcagtagaatggccttactgaagagctcagtgactttcaacgtggcatcatagaatgctacctttccaacaagtcagttcgggAAATTTCTGCCCTACTTGAGCTACCCCGGGcaactttaagtgctgttattgtgaagtggaaacatctaggagcaaaaACGGCTCAGCAGTAAAggggtaggccacacaagctcacagaatgcgAAGCACTCAGCGCTTAAAAATTGTCTGTTCTCGGTTACaccactcactactgagttccaaactgcctctggcacacaagccgaagatcaccatgtgcaatgctaagcagctggagtggtgtaaagctcaccaccattggactggAGCTTTGGAAACGcactctctggagtgatgaatcacgcttcatcatctggcagtccgacggatgaatcttggtttggcggatgccaggaaaaccctacctgtcccaatgcatagtgccaactgtaaagtttggtggaggaggaataatggtctggggctgttatggttcgggctaggccccttagtcccagtgaagggaaatcttaacttgACTGGcatacacagagccctgacctcaaccccattgaacacctttgggatgaattggaacatcgACTGTGAggcaggcctaatcgcccatcaTCAATGCCGACCTCACAtttgttcttgtggctgaatgaaagcaagtccccgcagcaaggTTCCAACAtaaagtggaaagccttctcaggagagtggaggctgttgtagcagcaaagggcagaccaactccatattaatgccatgattttggaatgagatgtttgactagagcaggtgtccacatacttttggtcatgtagtgtctcAAGGTTTAACAAAATAGGAATTGTAGCTTTTCAATGCATTCTGCCCCACCCCCCTCCAAAAattgatttccattcaaaatcttattttccctaacctctaacctgaaccctaaccctaaccctaaccctgaacctacacctaacccctaagcttacaatagcctttgtcctcatggggatgtgggaaatgtccccaTGAGGGAAAATGTTCCTTAATtgactatccttgtgaggacttttggGGGATTTCCGGTACCCATGAGGATAGTGAATaacccccccctccatcccctccgCCCCTCACACACAATAATGCTAAGCTGCCGTGGCACATTACAAGCAGGCACGGTTAGTCACCTCATGCTAACAGCCATCTAAACCATGGAATCTCAGGTATCCTCCCAAAAGCATGTAATATAAACTCATTAAGCCAAACTGTAATATAATGAGTAATATAATGATGAAGTTCACATTCTAGTTACAGGATGATATGACTGTCCTATTTTTGGAAATTGGCATACACTGGTTGAAAGATCCTCCAACGAAGCAACTGATCAACTACATCCCCTCATTCCCTGGAGTCTATCGACAACAGTCCTCAGATGCTGTACCCATTTGTGGCTGGGATTGGCACAAACAGTCTTCCCTTTCTTCAGTATGAACCTATGGATATTAGACACATTGTgggagatatacagtatatatacatatatataatttttttcattAGACTCTCATTGACAATATTGTTTTTTAGATTTACATTCTATGAGgagaaaaaaaggaaaacaaaCAATTTCATATGTCTCTTTCAACAAGTCCTCTTGACACATGACTTGAGGACATTTTCCTACCAGTGTCACAATGATTGACTGTTATGCGTGGCTTtgtttttatctggacacttaaTTGTGCTAAAGGGCAGGCTGACAGAAGGTGAGGACATGTtgcaacacactcacacaacggCCTTGATGTTGCAGCCTCCATCTGTTTCCTGTATCCTGTAGCTTACAACATTCCTCTTGGTACTCTTCTTCAGGCCAGTAACATGCCTCAGGCAGCAGTTCTCATACGACCCTAACAACAAGCATGAGGAAGTGAAATGGTTACAATCTTCTCTATACTCTTATTGTGCTGACCCATGACATGCTGTCATGTAGGGATATTTCAGTAGCAAATGGTTTGAATTGTGCAATTGTAATAGCAACCTAGTGTAATGAGTAGTTTCTGTAATTTGAGAAAGAATTACGAGTTAAGGTATTGCAGATGTCTGCAAGAGAGACATCAAAGGGACTTCATGTTTAAGCTGCTTGAAGTTGCATATGAGCTATGTAAACTACCGTCAAAGTCAAAGTGTTGTGAAATCTGGTGCCAGGCCATTTGAGACAATGTTTTgaaaggagggggagacagacataTCCCAACACATCAGTCTAAAATTTTCCCATAAATAATTATCTACATTATTTTCTAGTGGCAAAATATTCCTCTTCTGGACAAAGTATGGACCATTGGaagcttgtaaaaaaaaaactacgTAGAACAACTTTTCTCCATTCCAGAGGCACAAGGAGGTCTCCAGGCACAACAATGCATTAAGTGTACAAATGTGGAGTATAGGCtactatgtacagtatatttattttCAACAAGAAGTAAATTACAAGAAGTACTGAGAATGAACCAAAACACATGAAAGGCTTGCTTTACACCATTACACCAATTTCAGTGAACTTCACAATAATGAATCTACAGAATATGAATACCGTTCCTTAGATTGTTTAATGGTGCCTACCTTGAGCCAGAGTGAGATACATGCATGTCAGGAGCAGGAGAAAGAACAGAGCCTGGAACCTCATGGTGTCACTGCTGCTGTGGGGTCCGCTACAAGAACAGGACAGAATGTAAAGCAAGGGAAGCTTCCTCTTTTTAATACCTCCTCCACATCATCAACGTGATGTTTGTATTGAGACCACCCTGTCTATAATACCAGTATGTTCCCATTCTAGACCCCAATACTAGACCCCCACACTGACCCCTTGATTACAAACACGTCCTTCTTGGTAACAGTCAACCAGATCCAGATGTCTTCAGCTGTTTTCTCCAGCTATCATTTGTTTGGCTGAAACTCTGACCATGTTCTAATAAATCAACAACCAATCAGATAAAGCCAAACTCCGTCTCTCGAGCCAGCTGTATAAACTTGTGTCTTTTATTAGTTAGAAATGCAAAAGTACAGAATGTTTACAGCATTAATCCGAAAGCTAGTGAAGTATGAATTCAGCATTAGGCAAGGATATAAACATGCAAAAGGTCAACATATAAACAGTCCTGACAACCTCTCAACACAAAAGCCTACACCCACCAACAATGCAGAACATGCTGCAAATAAGCTCCTAAAAACTTACATAGTCTCTCAGAAGAAATGTCCTCGTTGAGTTCCCTTGGCTGTTTTATAGCTGCTATATAATACCTTCACCTCTCTACCAACCCTGTTACCTCAATCAGCCACACCTCCTCTGGCATGACAACCACGGTATGTTTTACAATTGCTGGGAAGAGGTACAATTTGAACAAGATTCACAATTGAATGCCACTGAACAGTTTTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU478871 lncRNA upstream 7365 60502052 ~ 60502319 (+) True G422612
TU478821 lncRNA upstream 65082 60444312 ~ 60444602 (+) True G422570
TU478817 lncRNA upstream 75821 60433211 ~ 60433863 (+) True G422566
TU478814 lncRNA upstream 85845 60423550 ~ 60423839 (+) True G422563
TU478813 lncRNA upstream 87084 60422156 ~ 60422600 (+) True G422562
TU478918 lncRNA downstream 78017 60591471 ~ 60591691 (+) True G422654
TU478922 lncRNA downstream 83161 60596615 ~ 60596844 (+) True G422658
TU478923 lncRNA downstream 83569 60597023 ~ 60597372 (+) True G422659
TU478938 lncRNA downstream 112036 60625490 ~ 60625880 (+) True G422674
TU478939 lncRNA downstream 112499 60625953 ~ 60626221 (+) True G422675
XM_021601327.2 mRNA upstream 25254 60480168 ~ 60484430 (+) True LOC110522875
XM_036977999.1 mRNA upstream 57042 60435763 ~ 60452642 (+) True LOC110524216
XM_021603663.2 mRNA upstream 77361 60427110 ~ 60432323 (+) True LOC110524215
XM_021603655.2 mRNA upstream 98646 60407553 ~ 60411038 (+) False hsh2d
XM_021603673.2 mRNA downstream 21079 60534533 ~ 60543487 (+) True ctns
XM_021603674.2 mRNA downstream 32727 60546181 ~ 60566583 (+) True LOC110524221
XM_021603679.2 mRNA downstream 177019 60690473 ~ 60692763 (+) False LOC110524224
XM_021603683.2 mRNA downstream 180766 60694220 ~ 60695904 (+) False LOC110524226
XM_036978000.1 mRNA downstream 257302 60770756 ~ 60858538 (+) False LOC110524227
TU476694 other upstream 1565467 58942728 ~ 58944217 (+) True G420634
TU476101 other upstream 2092908 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 2610036 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 3142347 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 3551519 56943838 ~ 56958165 (+) True LOC100135807
TU478964 other downstream 180803 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 1208083 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 1592069 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 1769698 62283152 ~ 62306937 (+) False LOC110524265
TU481721 other downstream 2531636 63045090 ~ 63051530 (+) True G425224

Expression Profile