RNA id: TU478939


Basic Information

Item Value
RNA id TU478939
length 269
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G422675
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60625953 ~ 60626221 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCCCCACAGATGTCTTCAACACTGCAGAAAAGTGAGGGAAAAGAGGATCATAATTGATTAATGATACGCTCTTCCAGACCTCGTAATGTTAGTATAGGTTTTCCAGTAACCCTCCAAAGTTTTCCATTCATATGGAACATCAATGAAGGTTGAAACAAATATTATATCAATGTGCGTCATGAAAGGTGTATCCTCCTTTGGGTCCTTGAGAGTTAATTCCAGCTCCGTCCTcactcacagacagagagagagagaataactcCAGCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU478938 lncRNA upstream 73 60625490 ~ 60625880 (+) True G422674
TU478923 lncRNA upstream 28581 60597023 ~ 60597372 (+) True G422659
TU478922 lncRNA upstream 29109 60596615 ~ 60596844 (+) True G422658
TU478918 lncRNA upstream 34262 60591471 ~ 60591691 (+) True G422654
TU478879 lncRNA upstream 51958 60509684 ~ 60573995 (+) False G422618
TU478943 lncRNA downstream 4015 60630236 ~ 60630441 (+) True G422679
TU478970 lncRNA downstream 36140 60662361 ~ 60662688 (+) True G422705
TU478974 lncRNA downstream 39971 60666192 ~ 60692730 (+) True LOC110524224
TU478983 lncRNA downstream 52445 60678666 ~ 60682745 (+) True G422717
TU478987 lncRNA downstream 67637 60693858 ~ 60694107 (+) True G422720
XM_021603674.2 mRNA upstream 59370 60546181 ~ 60566583 (+) True LOC110524221
XM_021603673.2 mRNA upstream 82466 60534533 ~ 60543487 (+) True ctns
XM_021601327.2 mRNA upstream 141523 60480168 ~ 60484430 (+) True LOC110522875
XM_036977999.1 mRNA upstream 173311 60435763 ~ 60452642 (+) True LOC110524216
XM_021603663.2 mRNA upstream 193630 60427110 ~ 60432323 (+) True LOC110524215
XM_021603679.2 mRNA downstream 64252 60690473 ~ 60692763 (+) False LOC110524224
XM_021603683.2 mRNA downstream 67999 60694220 ~ 60695904 (+) False LOC110524226
XM_036978000.1 mRNA downstream 144535 60770756 ~ 60858538 (+) False LOC110524227
XM_036978001.1 mRNA downstream 144536 60770757 ~ 60861371 (+) False LOC110524227
XM_036978002.1 mRNA downstream 144536 60770757 ~ 60861371 (+) False LOC110524227
TU476694 other upstream 1681736 58942728 ~ 58944217 (+) True G420634
TU476101 other upstream 2209177 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 2726305 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 3258616 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 3667788 56943838 ~ 56958165 (+) True LOC100135807
TU478964 other downstream 68036 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 1095316 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 1479302 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 1656931 62283152 ~ 62306937 (+) False LOC110524265
TU481721 other downstream 2418869 63045090 ~ 63051530 (+) True G425224

Expression Profile