RNA id: TU478987


Basic Information

Item Value
RNA id TU478987
length 250
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G422720
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60693858 ~ 60694107 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGTCAGACAGGCTTGACACTACGGAGCCGGTGCAAAATATGGCTCGGAAACCTtacctcaatccagggatgagAAATGCGTGGTACGTATCGTCCCATTATCCCAATTGTTACACCAAGAAGATTGAATGACTGCTACTCTGCATAATGAACAAACATTGTGTCAGTCAAATCTATGTGTTGGAATATAACACACTCATGTGTCTCAAACTTTTAGATGGGCCAAAATACATTTCAGACATGTTATATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU478974 lncRNA upstream 1128 60666192 ~ 60692730 (+) True LOC110524224
TU478983 lncRNA upstream 11113 60678666 ~ 60682745 (+) True G422717
TU478970 lncRNA upstream 31170 60662361 ~ 60662688 (+) True G422705
TU478943 lncRNA upstream 63417 60630236 ~ 60630441 (+) True G422679
TU478939 lncRNA upstream 67637 60625953 ~ 60626221 (+) True G422675
TU478966 lncRNA downstream 5936 60700043 ~ 60704580 (+) True G422701
TU479033 lncRNA downstream 164692 60858799 ~ 60861358 (+) False LOC110524227
TU479034 lncRNA downstream 164692 60858799 ~ 60861358 (+) True LOC110524227
TU479080 lncRNA downstream 193477 60887584 ~ 60889990 (+) True G422811
TU479083 lncRNA downstream 196071 60890178 ~ 60890448 (+) True G422814
XM_021603679.2 mRNA upstream 1095 60690473 ~ 60692763 (+) False LOC110524224
XM_021603674.2 mRNA upstream 127275 60546181 ~ 60566583 (+) True LOC110524221
XM_021603673.2 mRNA upstream 150371 60534533 ~ 60543487 (+) True ctns
XM_021601327.2 mRNA upstream 209428 60480168 ~ 60484430 (+) True LOC110522875
XM_036977999.1 mRNA upstream 241216 60435763 ~ 60452642 (+) True LOC110524216
XM_021603683.2 mRNA downstream 113 60694220 ~ 60695904 (+) False LOC110524226
XM_036978000.1 mRNA downstream 76649 60770756 ~ 60858538 (+) False LOC110524227
XM_036978001.1 mRNA downstream 76650 60770757 ~ 60861371 (+) False LOC110524227
XM_036978002.1 mRNA downstream 76650 60770757 ~ 60861371 (+) False LOC110524227
XM_021603693.2 mRNA downstream 245223 60939330 ~ 60942382 (+) True LOC110524234
TU476694 other upstream 1749641 58942728 ~ 58944217 (+) True G420634
TU476101 other upstream 2277082 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 2794210 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 3326521 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 3735693 56943838 ~ 56958165 (+) True LOC100135807
TU478964 other downstream 150 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 1027430 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 1411416 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 1589045 62283152 ~ 62306937 (+) False LOC110524265
TU481721 other downstream 2350983 63045090 ~ 63051530 (+) True G425224

Expression Profile