RNA id: TU478966


Basic Information

Item Value
RNA id TU478966
length 4479
lncRNA type intronic
GC content 0.42
exon number 2
gene id G422701
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60700043 ~ 60704580 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATCAATAGTTCAATAAAAGTCATTTATTGATTGTGTTGAACTGGCCACAGAGTGAACAAACTTATTGGGTGTGTGCATTCATGATACGCAGAACAAAAAGACCAGTCATATGTTATTGACATGATGACCCTGGCATTTCTCTTGTTGCAATAGTTGAACTTTTAATAAAAGAAACATCCAATAATCATGATTAAAGTGAGCCATTGAGTGTATCAGCCCTTTTGGTGCTCTAGAAACAGACCACAGATAAAAATCCACAGACACTCAGTGTGAACGTGCCATACTGGAGACAATAGAACAGAGAGTGAGGCACACGGACCCTGGCAACAAAGAAGTGTGTTCCTACCGTGGTCCATATGTGCTTTAGTCAACTCATCTGATCCTCATTGTCATTTGCCTGATACACATCTGGCACCAGGCTAGTTAGTGTATTTCAGTGTGAGACAGATAAGAGATGGTTGTGATCGACACATCTCTGGGCGAAAGAAAATGACAGGTAATTTCAAGCCCCCCCCATCTTGCACAGTAGTATCTTTCAGTGCAAGAACGATTTGTCACATTTCAAactagacatttttttttttttttttgcaaaagtgCATGTCAGTTATATGAATAGTAAATTTGTATTGATCCAGACATTATTCCATACGTATAGATTTAGACAGAATCTTAAAACATTGTTACATTTTGAGGGTACCCATCAGCATGGTTACATTGTAATGGCTCTCCTAAAGATGTAAGatcttaaagacatgctccgctACTTTGACGACTAAAAAATAATTGTTCAAACCTcctgctttgggctggatgtgtcaatgtgtagttcacaCATGCATAATggatgagcagaattactgtcttacctcaattagccatgaAATCCCTAGTGTGAAAACAACTGTTTTCTTGAAGCTGTGCTGCGCCCCATTTGAGTAACATCTAGCAAGAGGCCTGCTCAGCGTTATCCAATGAGACTCTAGCTATAGTCTGTTCACCCTGTTACCGTCTGTCAAACGGTTAGCGGAGCATCGGCTCCCAGACCAACAGTTTCCGAGACAGCttctagccataagactgctaaatagccataagactgctaaatagccataagactgctaaatagttcatTAAGGGTTACCCGGACTATCTCCAATGACTCTATGCACACTGAGACTATGCactgagggtacaaaacattaggaacaccagctctttccatggcatagacagaccaggtgaatccaagtgaaagctattatcccttattgatgtcaactGTTAATTCctcttaaatcagtgtagatgaaggggaggagacaggttaaagaaggatgtttaagccttgaggcaattgagacatggattgtgtgtgagtgccattcagagggtgaatgggcagacaaaatatttaagtgcctttgaacggggtatggtagtaggtgtcaagcgcaccggtttgagtgtgtcaagaactgcaacgctgctgtgtttttcacgctcaacagtttcctatgtGTATTAAGAATTTGatttgttgagagagagagagaaagcgcaaTGACATGCAACATTTAAAACTTGTTGTGTATtttagttttaaaaaggcttctgaagtttgtaatttacactttgaaatttcagacttgattttcacttaagaaaaatgtatcaaccctttcaaaaatgtccattaatattataattataattatataattataatccacataatactttacatttcctgttgctgcaggattattttcctgctgtagcaaactggctcaaattaagctcCAACATCTGTACCTAGGCACTGGATGGCTGTCCAGATTCTCAATAAAAACCCTTTGAACAAGAGCAGCAAGTGAAGATTTTTCCCAATAGTTTGTAAAGATATACTAATACATAGAGCTACATAACAAGTGCTTGTGAcagaaaaagtaaaaaaaaatagcagCCAAGGCACAAAATAACAAAGTTCAGTAGCACAGAGTAAAACACCTTGTGGAGAAACATGCTGCAAGATCTTCTCTGTTGTCACATTGATTATAGAAAAACACATAATATTTTTTCCCCAAGGCTTTACTTGTAAAATGTTTTATAAGGGAGCAGGAGTAGTTAGCCCAAGATACTGATCTAAGGTCTGTTTTGTGTTTGTCACCTGCAATCCTATGGCAACTTCTACTTGGGACCCTTTCCTAACAAATAGGCATGTTCTTCTTTTCTTCGCTAGAAGGCGCTATCACCATTCCAACAAGAGTAATATGACCAATTCAATCCTGTACAATTTGGAGCACTTTTGGGAAGTTTGTATTAGCTTCCACAGACAAAATTGTCTGATTAAAAACTATCAGCTACAAAGCTATATTATCTGCACATTTCAATCTAGAGGCTGTCATACTGTTGCCTATGATATCCTTAATTTGAATAAAAAGCTAACTGTTCAATAAATACATGATTTTATCCAAAATCTATTATCTTACATGTGTTATTAGTGCCACAGTGGTGGATATAACGAATAAGAATTCCATAGATTAATCTGGGTTTTGTAAAAATCCAGATTGCGCCATTTTTCATTAAAAAGAAAATCCAGGGAGAAATTATCCAGGGAAGAATTTACACACTTGTTACAGTCAccacgctctggataacatgaaaacagcctaaccagctctgctagggcgagtaaaatggtcagagtgaagtgttttctcatttgtgtctggaagtagctagcaagctagccaacgttagtcagttagcttgggtgcttgactgccgttgaggTCAGAAcactcagatcaaccctactcctcggccagagcatccagtgtgcgctctgaacactccgagagcgaaacgctctgaatttacgaactgacaatctgacaacgctctgaatttacgaactgacaatctcacaacgctctgaatttacgaaatgacaatctgacaacgctctgaatttacgaactgacaatctgacaacgctctgaatttacgtaCGACCCAGAAGCACTCTGACACACTGGAGGCAATTTAAGAATGCACCCTTTGACTGTACCAGAGTTAATccccattgcactgcacactgctctatcccacctggacaagagaaatacctatgtaagaatgctgttaatcgactacagctcagccttcaacaatATATTGCCCTACAAGATCAacactaagctcagggccctgggtctgaacccatcccacaacagtggtgggcctgataaccaacaatgatgagacagcctacagggtggaggtgagggccctggcggagtggtggcaggaaaataacctctccctcaacgtcaacaaaactaaggagctgatcgtggactacaggagacagcagagagggcacggccccatccacatcgacggggcgcagtggagagggtcaaaagcttcaaatTCCTCGGCATGCAGTTCACTGACAgcctgaaatggtcccttcacacaaACAGCTTCGTGGAGAAGGAgcaatagcgcctcttcaacttcaggtgGTTGAAGAGATTTGTCTTGGCCCCAAAAGAACCtcgcaaacttctacagatgcaccattgaaagcatcctgggctcccgagtggcgcagtggtccaaggcactgcatcgcagtgctagaggtgtcactacagaacctggttctattccaggctgtatcacaaccggacgtgattgtgAATCCCataaggcggcacacaattggcccagcatcgtccgggttacggtttggccggggtaaaccatcattgtaaataagaatttgttcttaactgacttgcctagttaaataaaggttaaataaatgaacaaaatcTAAATCCTGTCAGggtgtatcactgcctggtacggcaattacaCCTTCTGCAAcctcagggctctccagagggtggtgcggttaGCCAGGAGCACCACCGggagcacactgcctgccctccaggacatatACAGCACCTGGTGTCACAAGAAGGcctaaaagatcatcaaggacctgaGCCACTGACTGTTCATCCAGCTACAATCTATAAGGTGatgacagtacaggtgcatcaaagctgggaccgagagactgagaaacagcttctatctccaggccatcagactgttaaaaagtcaccactagccggcctccgcccagtaccctgtcctgaacCTTAATCACTGTTGCAGCCGGCTACCActcggtactctaccctgcaccttaagAAACTTCTGCCCTATGTACAGAGTCATTGAacgctggtcactttaataatgtttacacactgTTTCACCCACTTTATATACAGTATTCTACGCATGGCTCAtaaatataactactgctgtacacacctttctattcatatacctactcattcaagggttttcgttattttctactattttctacattgtagaataatagtgaagacgtcaaaactatgaaataacacaaatggaaccatgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU478987 lncRNA upstream 5936 60693858 ~ 60694107 (+) True G422720
TU478974 lncRNA upstream 7313 60666192 ~ 60692730 (+) True LOC110524224
TU478983 lncRNA upstream 17298 60678666 ~ 60682745 (+) True G422717
TU478970 lncRNA upstream 37355 60662361 ~ 60662688 (+) True G422705
TU478943 lncRNA upstream 69602 60630236 ~ 60630441 (+) True G422679
TU479033 lncRNA downstream 154219 60858799 ~ 60861358 (+) False LOC110524227
TU479034 lncRNA downstream 154219 60858799 ~ 60861358 (+) True LOC110524227
TU479080 lncRNA downstream 183004 60887584 ~ 60889990 (+) True G422811
TU479083 lncRNA downstream 185598 60890178 ~ 60890448 (+) True G422814
TU479110 lncRNA downstream 219683 60924263 ~ 60926985 (+) True G422838
XM_021603683.2 mRNA upstream 4139 60694220 ~ 60695904 (+) False LOC110524226
XM_021603679.2 mRNA upstream 7280 60690473 ~ 60692763 (+) False LOC110524224
XM_021603674.2 mRNA upstream 133460 60546181 ~ 60566583 (+) True LOC110524221
XM_021603673.2 mRNA upstream 156556 60534533 ~ 60543487 (+) True ctns
XM_021601327.2 mRNA upstream 215613 60480168 ~ 60484430 (+) True LOC110522875
XM_036978000.1 mRNA downstream 66176 60770756 ~ 60858538 (+) False LOC110524227
XM_036978001.1 mRNA downstream 66177 60770757 ~ 60861371 (+) False LOC110524227
XM_036978002.1 mRNA downstream 66177 60770757 ~ 60861371 (+) False LOC110524227
XM_021603693.2 mRNA downstream 234750 60939330 ~ 60942382 (+) True LOC110524234
XM_036978012.1 mRNA downstream 372924 61077504 ~ 61081007 (+) True LOC118964633
TU478964 other upstream 4138 60694257 ~ 60695905 (+) True LOC110524226
TU476694 other upstream 1755826 58942728 ~ 58944217 (+) True G420634
TU476101 other upstream 2283267 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 2800395 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 3332706 57365364 ~ 57367337 (+) True LOC110524119
TU480287 other downstream 1016957 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 1400943 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 1578572 62283152 ~ 62306937 (+) False LOC110524265
TU481721 other downstream 2340510 63045090 ~ 63051530 (+) True G425224
TU482675 other downstream 2971834 63676414 ~ 63684239 (+) True nfil3-4

Expression Profile