RNA id: TU479569


Basic Information

Item Value
RNA id TU479569
length 4464
lncRNA type intronic
GC content 0.42
exon number 2
gene id G423251
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60700049 ~ 60704571 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccatttgtgttatttcatagttttgacgtcttcactattattctacaatgtagaaaatagtagaaaataacgaaaacccttgaatgagtaggtatatgaatagaaaggtgtgtacagcagtagttatatttaTGAGCCATGCGTAGAATACTGTATATAAAGTGGGTGAAAcagtgtgtaaacattattaaagtgaccagcgtTCAATGACTCTGTACATAGGGCAGAAGTTTcttaaggtgcagggtagagtaccgagTGGTAGCCGGCTGCAACAGTGATTAAGgttcaggacagggtactgggcggaggccggctagtggtgactttttaacagtctgatggcctggagatagaagctgtttctcagtctctcggtcccagctttgatgcacctgtactgtcatCACCTTATAGATTGTAGCTGGATGAACAGTCAGTGGCtcaggtccttgatgatcttttaggCCTTCTTGTGACACCAGGTGCTGTatatgtcctggagggcaggcagtgtgctccCGGTGGTGCTCCTGGCtaaccgcaccaccctctggagagccctgaggTTGCAGAAGGtgtaattgccgtaccaggcagtgatacaccCTGACAGGATTTAgattttgttcatttatttaacctttatttaactaggcaagtcagttaagaacaaattcttatttacaatgatggtttaccccggccaaaccgtaacccggacgatgctgggccaattgtgtgccgccttatGGGATTcacaatcacgtccggttgtgatacagcctggaatagaaccaggttctgtagtgacacctctagcactgcgatgcagtgccttggaccactgcgccactcgggagcccaggatgctttcaatggtgcatctgtagaagtttgcgaGGTTCTTTTGGGGCCAAGACAAATCTCTTCAACcacctgaagttgaagaggcgctattgcTCCTTCTCCACGAAGCTGTttgtgtgaagggaccatttcaggcTGTCAGTGAACTGCATGCCGAGGAatttgaagcttttgaccctctccactgcgccccgtcgatgtggatggggccgtgccctctctgctgtctcctgtagtccacgatcagctccttagttttgttgacgttgagggagaggttattttcctgccaccactccgccagggccctcacctccaccctgtaggctgtctcatcattgttggttatcaggcccaccactgttgtgggatgggttcagacccagggccctgagcttagtgtTGATCTTGTAGGGCAATATattgttgaaggctgagctgtagtcgattaacagcattcttacataggtatttctcttgtccaggtgggatagagcagtgtgcagtgcaatggggATTAACTCTGGTACAGTCAAAGGGTGCATTCTTAAATTGCCTCCAGTGTGTCAGAGTGCTTCTGGGTCGtacgtaaattcagagcgttgtcagattgtcagttcgtaaattcagagcgttgtcagattgtcatttcgtaaattcagagcgttgtgagattgtcagttcgtaaattcagagcgttgtcagattgtcagttcgtaaattcagagcgtttcgctctcggagtgttcagagcgcacactggatgctctggccgaggagtagggttgatctgagtgTTCTGAcctcaacggcagtcaagcacccaagctaactgactaacgttggctagcttgctagctacttccagacacaaatgagaaaacacttcactctgaccattttactcgccctagcagagctggttaggctgttttcatgttatccagagcgtggTGACTGTAACAAGTGTGTAAATTCTTCCCTGGATAATTTCTCCCTGGATTTTCTTTTTAATGAAAAATGGCGCAATCTGGATTTTTACAAAACCCAGATTAATCTATGGAATTCTTATTCGTTATATCCACCACTGTGGCACTAATAACACATGTAAGATAATAGATTTTGGATAAAATCATGTATTTATTGAACAGTTAGCTTTTTATTCAAATTAAGGATATCATAGGCAACAGTATGACAGCCTCTAGATTGAAATGTGCAGATAATATAGCTTTGTAGCTGATAGTTTTTAATCAGACAATTTTGTCTGTGGAAGCTAATACAAACTTCCCAAAAGTGCTCCAAATTGTACAGGATTGAATTGGTCATATTACTCTTGTTGGAATGGTGATAGCGCCTTCTAGCGAAGAAAAGAAGAACATGCCTATTTGTTAGGAAAGGGTCCCAAGTAGAAGTTGCCATAGGATTGCAGGTGACAAACACAAAACAGACCTTAGATCAGTATCTTGGGCTAACTACTCCTGCTCCCTTATAAAACATTTTACAAGTAAAGCCTTGGGGAAAAAATATTATGTGTTTTTCTATAATCAATGTGACAACAGAGAAGATCTTGCAGCATGTTTCTCCACAAGGTGTTTTACTCTGTGCTACTGAACTTTGTTATTTTGTGCCTTGGctgctatttttttttactttttctgTCACAAGCACTTGTTATGTAGCTCTATGTATTAGTATATCTTTACAAACTATTGGGAAAAATCTTCACTTGCTGCTCTTGTTCAAAGGGTTTTTATTGAGAATCTGGACAGCCATCCAGTGCCTAGGTACAGATGTTGgagcttaatttgagccagtttgctacagcaggaaaataatcctgcagcaacaggaaatgtaaagtattatgtggattataattatataattataattataatattaatggacatttttgaaagggttgatacatttttcttaagtgaaaatcaagtctgaaatttcaaagtgtaaattacaaacttcagaagcctttttaaaactaaaATACACAACAAGTTTTAAATGTTGCATGTCAttgcgctttctctctctctctcaacaaatCAAATTCTTAATACacataggaaactgttgagcgtgaaaaacacagcagcgttgcagttcttgacacactcaaaccggtgcgcttgacacctactaccataccccgttcaaaggcacttaaatattttgtctgcccattcaccctctgaatggcactcacacacaatccatgtctcaattgcctcaaggcttaaacatccttctttaacctgtctcctccccttcatctacactgatttaagagGAATTAACagttgacatcaataagggataatagctttcacttggattcacctggtctgtctatgccatggaaagagctggtgttcctaatgttttgtaccctcagtGCATAGTCTCAGTGTGCATAGAGTCATTGGAGATAGTCCGGGTAACCCTTAatgaactatttagcagtcttatggctatttagcagtcttatggctatttagcagtcttatggctagaaGCTGTCTCGGAAACTGTTGGTCTGGGAGCCGATGCTCCGCTAACCGTTTGACAGACGGTAACAGGGTGAACAGACTATAGCTAGAGTCTCATTGGATAACGCTGAGCAGGCCTCTTGCTAGATGTTACTCAAATGGGGCGCAGCACAGCTTCAAGAAAACAGTTGTTTTCACACTAGGGATTtcatggctaattgaggtaagacagtaattctgctcatccATTATGCATGtgtgaactacacattgacacatccagcccaaagcaggAGGTTTGAACAATTATTTTTTAGTCGTCAAAGTagcggagcatgtctttaagatCTTACATCTTTAGGAGAGCCATTACAATGTAACCATGCTGATGGGTACCCTCAAAATGTAACAATGTTTTAAGATTCTGTCTAAATCTATACGTATGGAATAATGTCTGGATCAATACAAATTTACTATTCATATAACTGACATGcacttttgcaaaaaaaaaaaaaaaaatgtctagtTTGAAATGTGACAAATCGTTCTTGCACTGAAAGATACTACTGTGCAAGATGGGGGGGGCTTGAAATTACCTGTCATTTTCTTTCGCCCAGAGATGTGTCGATCACAACCATCTCTTATCTGTCTCACACTGAAATACACTAACTAGCCTGGTGCCAGATGTGTATCAGGCAAATGACAATGAGGATCAGATGAGTTGACTAAAGCACATATGGACCACGGTAGGAACACACTTCTTTGTTGCCAGGGTCCGTGTGCCTCACTCTCTGTTCTATTGTCTCCAGTATGGCACGTTCACACTGAGTGTCTGTGGATTTTTATCTGTGGTCTGTTTCTAGAGCACCAAAAGGGCTGATACACTCAATGGCTCACTTTAATCATGATTATTGGATGTTTCTTTTATTAAAAGTTCAACTATTGCAACAAGAGAAATGCCAGGGTCATCATGTCAATAACATATGACTGGTCTTTTTGTTCTGCGTATCATGAATGCACACACCCAATAAGTTTGTTCACTCTGTGGCCAGTTCAACACAATCAATAAATGACTTTTATTGAACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479573 lncRNA downstream 1826 60696001 ~ 60698223 (-) True cers4a
TU479563 lncRNA downstream 47987 60651372 ~ 60652062 (-) True G423246
TU479546 lncRNA downstream 72454 60627389 ~ 60627595 (-) True G423230
TU479518 lncRNA downstream 103767 60596015 ~ 60596282 (-) True G423205
TU479515 lncRNA downstream 105852 60593903 ~ 60594197 (-) True G423202
TU479615 lncRNA upstream 39701 60744272 ~ 60744501 (-) True G423291
TU479652 lncRNA upstream 105066 60809637 ~ 60809875 (-) True G423326
TU479654 lncRNA upstream 107626 60812197 ~ 60812455 (-) True G423328
TU479687 lncRNA upstream 136059 60840630 ~ 60841048 (-) True G423357
TU479693 lncRNA upstream 142339 60846910 ~ 60847364 (-) True G423363
XM_021603677.2 mRNA downstream 17166 60678698 ~ 60682883 (-) True ndufa11
XM_021603678.2 mRNA downstream 17343 60678698 ~ 60682706 (-) False ndufa11
XM_021603676.2 mRNA downstream 73574 60605208 ~ 60626475 (-) True LOC110524222
XM_021603670.2 mRNA downstream 186569 60509679 ~ 60513480 (-) False LOC110524219
XM_021603672.2 mRNA downstream 186814 60509679 ~ 60513235 (-) False LOC110524219
LOC110524228 mRNA upstream 156876 60861447 ~ 60884008 (-) False LOC110524228
XM_036978005.1 mRNA upstream 197827 60902398 ~ 60913736 (-) False timm44
XM_036978003.1 mRNA upstream 197827 60902398 ~ 60913937 (-) False timm44
XM_021603685.2 mRNA upstream 197827 60902398 ~ 60914277 (-) False timm44
XM_036978004.1 mRNA upstream 197827 60902398 ~ 60914281 (-) True timm44
TU478587 other downstream 598993 60100765 ~ 60101056 (-) True G422347
TU477230 other downstream 1561792 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 1663750 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 2285906 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 2585989 58112387 ~ 58114060 (-) True G420193
TU479791 other upstream 354423 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 912299 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 945396 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 954462 61659033 ~ 61659585 (-) True G424502
TU481096 other upstream 1183627 61888198 ~ 61927422 (-) False G424649

Expression Profile