RNA id: TU479691



Basic Information


Item Value
RNA id TU479691
length 346
lncRNA type antisense_over
GC content 0.61
exon number 2
gene id G423361
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60854583 ~ 60855115 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCTCCTCTAGCTAACCTCTGCCGTCGGTGGTGTACCCGGGTCCCAGTGGGCACATCCTCTTGTACTGCACGGTGCCAGGCAGTGGGCAGAGCTCACACTGGGGTCCCCAGCCGCGCCCAAGATTGCAGCAGCACTCCGATTTGGTGACACTGTTCCTGTTGGTGGAGCCCTGCTGACACATAGTCTGAAGCACCTCGGTGAAACAGAAGCCCTGTCGGTACCGATACAGTCCGTTCCGGTGGAGCTGGGCTGGAAGCCCTCGTTGCACACACAGCGGTAGCTGCCCACTGTGTTCTCACACCGCCCGTTCTTACAGACGCCAGGCTTCGCGCGACACTCATTCAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU479695 lncRNA downstream 2095 60852156 ~ 60852488 (-) True G423365
TU479694 lncRNA downstream 2884 60851103 ~ 60851699 (-) True G423364
TU479693 lncRNA downstream 7219 60846910 ~ 60847364 (-) True G423363
TU479687 lncRNA downstream 13535 60840630 ~ 60841048 (-) True G423357
TU479654 lncRNA downstream 42128 60812197 ~ 60812455 (-) True G423328
TU479690 lncRNA upstream 145 60855260 ~ 60855923 (-) True G423360
TU479664 lncRNA upstream 6412 60861527 ~ 60883966 (-) True LOC110524228
TU479714 lncRNA upstream 46401 60901516 ~ 60901755 (-) True G423384
TU479721 lncRNA upstream 77684 60932799 ~ 60933048 (-) True G423391
TU479724 lncRNA upstream 81885 60937000 ~ 60937221 (-) True G423394
XM_021603680.2 mRNA downstream 125611 60695903 ~ 60728972 (-) False cers4a
XM_021603681.2 mRNA downstream 125611 60695903 ~ 60728972 (-) False cers4a
XM_021603682.2 mRNA downstream 125611 60695903 ~ 60728972 (-) False cers4a
XM_021603677.2 mRNA downstream 171700 60678698 ~ 60682883 (-) True ndufa11
XM_021603678.2 mRNA downstream 171877 60678698 ~ 60682706 (-) False ndufa11
LOC110524228 mRNA upstream 6332 60861447 ~ 60884008 (-) False LOC110524228
XM_036978005.1 mRNA upstream 47283 60902398 ~ 60913736 (-) False timm44
XM_036978003.1 mRNA upstream 47283 60902398 ~ 60913937 (-) False timm44
XM_021603685.2 mRNA upstream 47283 60902398 ~ 60914277 (-) False timm44
XM_036978004.1 mRNA upstream 47283 60902398 ~ 60914281 (-) True timm44
TU478587 other downstream 753527 60100765 ~ 60101056 (-) True G422347
TU477230 other downstream 1716326 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 1818284 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 2440440 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 2740523 58112387 ~ 58114060 (-) True G420193
TU479791 other upstream 203879 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 761755 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 794852 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 803918 61659033 ~ 61659585 (-) True G424502
TU481096 other upstream 1033083 61888198 ~ 61927422 (-) False G424649

Expression Profile