RNA id: TU479714



Basic Information


Item Value
RNA id TU479714
length 240
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G423384
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60901516 ~ 60901755 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTATTTCAGTGCTGTCTGTGATGATGGATCCCCCTAACTGGTGTGctacacaattgagatggtttgggatgagttggactgcagagtgaaggaaaagcagccaacaagtgctcagcatatgtgggaactccttcaagacttggagaagcattcctcatgaaactggttgagagaatgtcaagagtgtgcaaagctgtcatggcaaagggtggctagtatgaagaatctcaaatgtatata

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU479664 lncRNA downstream 17550 60861527 ~ 60883966 (-) True LOC110524228
TU479690 lncRNA downstream 45593 60855260 ~ 60855923 (-) True G423360
TU479691 lncRNA downstream 46401 60854583 ~ 60855115 (-) True G423361
TU479695 lncRNA downstream 49028 60852156 ~ 60852488 (-) True G423365
TU479694 lncRNA downstream 49817 60851103 ~ 60851699 (-) True G423364
TU479721 lncRNA upstream 31044 60932799 ~ 60933048 (-) True G423391
TU479724 lncRNA upstream 35245 60937000 ~ 60937221 (-) True G423394
TU479730 lncRNA upstream 64754 60966509 ~ 60967764 (-) True LOC110524237
TU479767 lncRNA upstream 129516 61031271 ~ 61093488 (-) True G423435
TU479834 lncRNA upstream 344803 61246558 ~ 61246791 (-) True G423495
LOC110524228 mRNA downstream 17508 60861447 ~ 60884008 (-) False LOC110524228
XM_021603680.2 mRNA downstream 172544 60695903 ~ 60728972 (-) False cers4a
XM_021603681.2 mRNA downstream 172544 60695903 ~ 60728972 (-) False cers4a
XM_021603682.2 mRNA downstream 172544 60695903 ~ 60728972 (-) False cers4a
XM_021603677.2 mRNA downstream 218633 60678698 ~ 60682883 (-) True ndufa11
XM_036978005.1 mRNA upstream 643 60902398 ~ 60913736 (-) False timm44
XM_036978003.1 mRNA upstream 643 60902398 ~ 60913937 (-) False timm44
XM_021603685.2 mRNA upstream 643 60902398 ~ 60914277 (-) False timm44
XM_036978004.1 mRNA upstream 643 60902398 ~ 60914281 (-) True timm44
XM_021603686.2 mRNA upstream 13262 60915017 ~ 60930097 (-) False LOC110524230
TU478587 other downstream 800460 60100765 ~ 60101056 (-) True G422347
TU477230 other downstream 1763259 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 1865217 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 2487373 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 2787456 58112387 ~ 58114060 (-) True G420193
TU479791 other upstream 157239 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 715115 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 748212 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 757278 61659033 ~ 61659585 (-) True G424502
TU481096 other upstream 986443 61888198 ~ 61927422 (-) False G424649

Expression Profile