RNA id: TU479767


Basic Information

Item Value
RNA id TU479767
length 214
lncRNA type read_through
GC content 0.50
exon number 2
gene id G423435
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61031271 ~ 61093488 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggtggggggggggggggggggggggggggggggggggggggggggggggggggggggggggtgggggggggggggtcacaattCTGTTTGTAACTTGTTTACATGGATATGCTTcttaattaaaatgtattttaaacaaGTAATTACAATTCATTATTATCATGGCATTTCATTATTATTGTTCAGGTTATTACTTCTAAATATGAATCAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479730 lncRNA downstream 63507 60966509 ~ 60967764 (-) True LOC110524237
TU479724 lncRNA downstream 94050 60937000 ~ 60937221 (-) True G423394
TU479721 lncRNA downstream 98223 60932799 ~ 60933048 (-) True G423391
TU479714 lncRNA downstream 129516 60901516 ~ 60901755 (-) True G423384
TU479664 lncRNA downstream 147305 60861527 ~ 60883966 (-) True LOC110524228
TU479834 lncRNA upstream 153070 61246558 ~ 61246791 (-) True G423495
TU479836 lncRNA upstream 155080 61248568 ~ 61248887 (-) True G423497
TU479849 lncRNA upstream 170403 61263891 ~ 61265340 (-) True G423509
TU479850 lncRNA upstream 172322 61265810 ~ 61266048 (-) True G423510
TU479877 lncRNA upstream 190075 61283563 ~ 61285664 (-) True G423534
XM_036978007.1 mRNA downstream 60292 60966400 ~ 60970979 (-) False LOC110524237
XM_036978008.1 mRNA downstream 60292 60966400 ~ 60970979 (-) False LOC110524237
XM_021603697.2 mRNA downstream 60294 60966400 ~ 60970977 (-) False LOC110524237
XM_021603696.2 mRNA downstream 65125 60952905 ~ 60966146 (-) True LOC110524236
XM_021603691.2 mRNA downstream 79629 60944007 ~ 60951642 (-) False LOC110524231
XM_021603706.2 mRNA upstream 11269 61104757 ~ 61120597 (-) False tjp3
XM_021603702.2 mRNA upstream 11269 61104757 ~ 61120852 (-) False tjp3
XM_021603708.2 mRNA upstream 11269 61104757 ~ 61123430 (-) False tjp3
XM_021603704.2 mRNA upstream 11269 61104757 ~ 61124205 (-) False tjp3
XM_021603703.2 mRNA upstream 11269 61104757 ~ 61124658 (-) False tjp3
TU478587 other downstream 930215 60100765 ~ 60101056 (-) True G422347
TU477230 other downstream 1893014 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 1994972 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 2617128 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 2917211 58112387 ~ 58114060 (-) True G420193
TU480894 other upstream 523382 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 556479 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 565545 61659033 ~ 61659585 (-) True G424502
TU481096 other upstream 794710 61888198 ~ 61927422 (-) False G424649
TU481097 other upstream 794710 61888198 ~ 61913769 (-) True G424649

Expression Profile