RNA id: TU479836



Basic Information


Item Value
RNA id TU479836
length 320
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G423497
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61248568 ~ 61248887 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGGCAGACACAGCATATTTACAGGGAAATAATGAACTAGGAGCTTTTGGGGCAAGTTATGCAATTCGGGTTCGTCAGAGATTTATATAAATCGCATTAGATGGGGTAATTCACGTGCCTCTTAACTCACATTCATGTGTGTTAAGCAATGTGTGGTTAAGTCACATTCGTGTGTGTTAAGCAAATGTGTGGGTTTATGGGTTATACATTGTACTAGGTCTACTACATTAGGCCTACTCTCTATTTAGTTTGAACTCATTTGAGATGAACACATTAAAATCCTTTCCTGCAGTCGAATGACCAAATCGCCATCTATTTTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU479834 lncRNA downstream 1777 61246558 ~ 61246791 (-) True G423495
TU479767 lncRNA downstream 155080 61031271 ~ 61093488 (-) True G423435
TU479730 lncRNA downstream 280804 60966509 ~ 60967764 (-) True LOC110524237
TU479724 lncRNA downstream 311347 60937000 ~ 60937221 (-) True G423394
TU479721 lncRNA downstream 315520 60932799 ~ 60933048 (-) True G423391
TU479849 lncRNA upstream 15004 61263891 ~ 61265340 (-) True G423509
TU479850 lncRNA upstream 16923 61265810 ~ 61266048 (-) True G423510
TU479877 lncRNA upstream 34676 61283563 ~ 61285664 (-) True G423534
TU480124 lncRNA upstream 247108 61495995 ~ 61496241 (-) True G423767
TU480151 lncRNA upstream 279644 61528531 ~ 61528739 (-) True G423794
XM_021603710.2 mRNA downstream 6562 61139319 ~ 61242006 (-) False LOC110524243
XM_021603711.2 mRNA downstream 6562 61139319 ~ 61242006 (-) True LOC110524243
XM_021603713.2 mRNA downstream 31967 61139319 ~ 61216601 (-) False LOC110524243
XM_021603712.2 mRNA downstream 46006 61139319 ~ 61202562 (-) False LOC110524243
XM_021603714.2 mRNA downstream 64302 61139319 ~ 61184266 (-) False LOC110524243
trnaa-agc-3 mRNA upstream 17810 61266697 ~ 61266769 (-) True trnaa-agc-3
XM_036978016.1 mRNA upstream 55226 61304113 ~ 61511078 (-) True LOC110522983
XM_021603720.2 mRNA upstream 369100 61617987 ~ 61622355 (-) False LOC110524247
XM_021603723.2 mRNA upstream 411262 61660149 ~ 61679106 (-) True LOC110524249
XM_021603730.2 mRNA upstream 514231 61763118 ~ 61786354 (-) False LOC110524252
TU479791 other downstream 177425 61058994 ~ 61071143 (-) True LOC110524239
TU478587 other downstream 1147512 60100765 ~ 60101056 (-) True G422347
TU477230 other downstream 2110311 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 2212269 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 2834425 58413128 ~ 58414143 (-) True G420421
TU480894 other upstream 367983 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 401080 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 410146 61659033 ~ 61659585 (-) True G424502
TU481096 other upstream 639311 61888198 ~ 61927422 (-) False G424649
TU481097 other upstream 639311 61888198 ~ 61913769 (-) True G424649

Expression Profile