RNA id: TU479877


Basic Information

Item Value
RNA id TU479877
length 2078
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G423534
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61283563 ~ 61285664 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATTTCGTTTTGTTTATTAGGATATCACAGTAGAGATGATGAAAATGCAAAGACAGAATATCACAGAATCAGAATTTCTTAACAACAACGTCAAGATCTCATTTGTTACTTTTGTATCACAGCGTCAGCATATAGCCCTAACTATAGATACATTCATGCATCAAGATAATGATCAATACAGTTAAAATCGGGCTATTTCACAATTGAACAAAGAGTGTAATCGATAATTATGGCTGCATAGAAATATGAGATATTAAAGCAGCTATTAAAGCAGCTATTAAAGCAGCTATAACATAGTTATGTTAGTTCAGCTTCAGCCCCAGATACAGGTATAACATGCTTGCTATAGACTAACCATTTCGTCATAAAATATATCTAAGTGCAATATTCGCTACTATGTTTATTGAGCTCTGGTATGGCATGCCAGTACTTAGTTAGTTACTGAGGTAAATAATGTTTAATAATTGGCTCTACTCAAACATGGCAACTGCTCACTCGGCACAAACACCATTTCAATgtgtagttttgatttacatttggttgagttggcAACTAACGTGAAATAAACACAAAATCACACGTCATTGGATTTATGTTCAAaattgggtgaaaaaaatacagAATTCCCTTACGTTGAGGACGTTTCCAAATCTAACCAGTtttcacgttgattcaacgtcattgCATTACATattgttgttgaaatgacatggaaacataaTTGATtaaaccagtttgtgcccagagGCAGGCGACTGGGGGCGCAGTAAACTCAAAGGGCACCTCTGAGCAGTGTCCTGCCAGGACAGGCAAAGCTTGGGCATCATGCTGGCAACTGGCAACATTCACAGAtggactggccacccttcatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccaatgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttctgtacagcactgatgtacgaagggctatataaatacatttgatttgatttgattgatcagGCGTTAGTAGTCTGCTTTAAAGCTCATCATAATTCTCTGCTAATCAGGCCTCTGAGAGAGAGGATCTCTTAATGTGCTACATTCATTACACTCAGACAGACATAGTAAattatctctgtctttctgtctctgtctgtactgCACACTAATTAATATGACTCTCTCCGGCTGGCACTGCTTGAAGTCGAGTGCCTCTCGCAAAGGGCCTTTTTCTCTGCAAATGAAGCCACATTGAGACCAGAACACACTGTGGAGTCTGAGACCCCATCATGCTTGTGGCCTCTCTCCATGCCTCCAATAGACACATAGTCAACTATGGAGTTGTTTAATGAAAGGCTTTCCAATCTTGATGTGCCTGAGAAATTATGATCAGCTGCAGTTACTAGCTAAGCCTCTCTGAGACAGTGAAAGGCGCACGGAACGCTCTCAACAAACTTTCACCTCGTTTAACACCAGACAGGAGAAATCCTAGAGATAAAGATTCCGCACCTTATTGAACAAAGCAGTTGCTTTCCCTCGCTGGTGAATCCTGCAAATTAGCATGTGTTGTCAGTGATGTTTATCCATGTTGTTAAGTTAAAGCAATGGATGGAGCTATGTTGTACAGGCAGTGATCTTAAccctcctctcagtctctctctctctagatggtTCTGGTGGAGGTGGTGTTCATGGGGATGTCCTTGCTGCTCTTCCTTGGGCCCTGGGTCGACTTCACCACATCCCCATTAACACTCTCTTCATTCTTGCGGAAGCAGTAGACCCCGTAGAGGCGGAACTTCAGGTCAGGGAAGCCCAGGTGGCGGACTCCCGGTTGGGGCCCGCCGCAGCGGGTACGTGGGTTGACGATGGGGTAACGGATGCTTGCGTCCTCCAGCCAGCCAGCTTCACAGCGGTCCAGCAGCTGGATCTTCCAGGCAGCGTAGAGCTGGCCCGTCTTGGCCACCACGGAGCCATCACGAACGCACGCCTTCACTGCTTCAGAATAATTCACCTTCTTAAAGCGCTTCAGGAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479850 lncRNA downstream 17515 61265810 ~ 61266048 (-) True G423510
TU479849 lncRNA downstream 18223 61263891 ~ 61265340 (-) True G423509
TU479836 lncRNA downstream 34676 61248568 ~ 61248887 (-) True G423497
TU479834 lncRNA downstream 36772 61246558 ~ 61246791 (-) True G423495
TU479767 lncRNA downstream 190075 61031271 ~ 61093488 (-) True G423435
TU480124 lncRNA upstream 210331 61495995 ~ 61496241 (-) True G423767
TU480151 lncRNA upstream 242867 61528531 ~ 61528739 (-) True G423794
TU480818 lncRNA upstream 247166 61532830 ~ 61595934 (-) True G424412
TU480882 lncRNA upstream 315090 61600754 ~ 61601112 (-) True G424462
TU480883 lncRNA upstream 315608 61601272 ~ 61601693 (-) True G424463
trnaa-agc-3 mRNA downstream 16794 61266697 ~ 61266769 (-) True trnaa-agc-3
XM_021603710.2 mRNA downstream 41557 61139319 ~ 61242006 (-) False LOC110524243
XM_021603711.2 mRNA downstream 41557 61139319 ~ 61242006 (-) True LOC110524243
XM_021603713.2 mRNA downstream 66962 61139319 ~ 61216601 (-) False LOC110524243
XM_021603712.2 mRNA downstream 81001 61139319 ~ 61202562 (-) False LOC110524243
XM_036978016.1 mRNA upstream 18449 61304113 ~ 61511078 (-) True LOC110522983
XM_021603720.2 mRNA upstream 332323 61617987 ~ 61622355 (-) False LOC110524247
XM_021603723.2 mRNA upstream 374485 61660149 ~ 61679106 (-) True LOC110524249
XM_021603730.2 mRNA upstream 477454 61763118 ~ 61786354 (-) False LOC110524252
XM_021603729.2 mRNA upstream 477454 61763118 ~ 61786542 (-) True LOC110524252
TU479791 other downstream 212420 61058994 ~ 61071143 (-) True LOC110524239
TU478587 other downstream 1182507 60100765 ~ 60101056 (-) True G422347
TU477230 other downstream 2145306 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 2247264 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 2869420 58413128 ~ 58414143 (-) True G420421
TU480894 other upstream 331206 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 364303 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 373369 61659033 ~ 61659585 (-) True G424502
TU481096 other upstream 602534 61888198 ~ 61927422 (-) False G424649
TU481097 other upstream 602534 61888198 ~ 61913769 (-) True G424649

Expression Profile