RNA id: TU480917



Basic Information


Item Value
RNA id TU480917
length 204
lncRNA type antisense_over
GC content 0.51
exon number 1
gene id G424497
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61649448 ~ 61649651 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTCCAGTATGTCTGTGTTGGTCCTGCTCTCGTGAGGCTCGCTGTACTCTGTGTACTTGAGCAGGACCTTGTCCATGTCAGTGCTGGCGTACTGGAACAGACGGTTGGTGCTGTTGAAGATGATGAGGGCGatctcacagtcacacagtacACTCAGCTCATACGCTTTCTTCATCAGGCCAAACTTACGCTTGGTGAATGTCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU480907 lncRNA downstream 12082 61637113 ~ 61637366 (-) True G424487
TU480903 lncRNA downstream 20950 61628276 ~ 61628498 (-) True G424483
TU480895 lncRNA downstream 30707 61618053 ~ 61618741 (-) True LOC110524247
TU480891 lncRNA downstream 37878 61611298 ~ 61611570 (-) True G424471
TU480887 lncRNA downstream 41985 61603707 ~ 61607463 (-) True G424467
TU480921 lncRNA upstream 2371 61652022 ~ 61652284 (-) True G424500
TU480922 lncRNA upstream 3281 61652932 ~ 61656404 (-) False G424501
TU480925 lncRNA upstream 3805 61653456 ~ 61655240 (-) False G424501
TU480927 lncRNA upstream 3805 61653456 ~ 61654455 (-) False G424501
TU480924 lncRNA upstream 5698 61655349 ~ 61656404 (-) True G424501
XM_021603720.2 mRNA downstream 27093 61617987 ~ 61622355 (-) False LOC110524247
XM_036978016.1 mRNA downstream 138370 61304113 ~ 61511078 (-) True LOC110522983
trnaa-agc-3 mRNA downstream 382679 61266697 ~ 61266769 (-) True trnaa-agc-3
XM_021603710.2 mRNA downstream 407442 61139319 ~ 61242006 (-) False LOC110524243
XM_021603723.2 mRNA upstream 10498 61660149 ~ 61679106 (-) True LOC110524249
XM_021603730.2 mRNA upstream 113467 61763118 ~ 61786354 (-) False LOC110524252
XM_021603729.2 mRNA upstream 113467 61763118 ~ 61786542 (-) True LOC110524252
XM_021601328.2 mRNA upstream 191910 61841561 ~ 61842727 (-) True tssk6
XM_021603741.2 mRNA upstream 384438 62034089 ~ 62037994 (-) False si:ch211-212d10.2
TU480894 other downstream 32204 61616870 ~ 61617244 (-) True G424474
TU479791 other downstream 578305 61058994 ~ 61071143 (-) True LOC110524239
TU478587 other downstream 1548392 60100765 ~ 60101056 (-) True G422347
TU477230 other downstream 2511191 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 2613149 59026103 ~ 59036299 (-) True G420982
TU480919 other upstream 316 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 9382 61659033 ~ 61659585 (-) True G424502
TU481096 other upstream 238547 61888198 ~ 61927422 (-) False G424649
TU481097 other upstream 238547 61888198 ~ 61913769 (-) True G424649
TU481131 other upstream 348875 61998526 ~ 62001309 (-) True G424678

Expression Profile